Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9HG9	52131	2025-06-22	2024-11-19	2.88	3.62	3.05	3.4	0.003	0.51	0.0	0.04	13.88	0.00	2.046	4.81	0.28	3.2	96.8	0.0	0.83	0.69	0.81	3.73	3.4	0.003	0.55	0.0	0.04	15.11	0.00	2.116	3.41	1.18	3.4	96.6	0.0	0.78	0.47	0.68	0.81	3.52	26335	1708	8	0	1	0	12929	logfile
✔	9HG7	52129	2025-06-26	2024-11-19	2.83	3.67	3.03	3.4	0.004	0.65	0.0	0.04	14.78	0.01	2.122	7.19	1.16	3.1	96.7	0.2	0.16	0.71	0.77	2.64	3.4	0.003	0.54	0.0	0.04	15.26	0.00	2.293	4.36	0.55	2.8	97.2	0.0	0.46	0.94	0.73	0.82	2.81	30038	1953	6	0	0	0	14802	logfile
✔	9HG6	52127	2025-06-27	2024-11-19	2.73	3.61	2.90	3.3	0.003	0.59	0.0	0.04	16.43	0.00	1.983	5.44	1.21	3.0	96.9	0.1	0.21	0.71	0.78	3.20	3.3	0.003	0.54	0.0	0.04	16.46	0.00	2.297	3.88	0.86	3.7	96.2	0.0	0.49	0.88	0.71	0.80	2.95	31980	2085	6	0	0	0	15755	logfile
✔	9KNW	62464	2025-06-04	2024-11-19	3.41	3.70	3.47	3.7	0.009	0.93	0.0	0.04	19.17	0.00	2.299	14.27	1.48	2.1	97.9	0.0	-1.35	0.53	0.77	1.61	3.8	0.004	1.40	1.0	0.05	17.67	0.00	2.417	9.93	3.70	1.2	98.8	0.0	1.77	0.97	0.51	0.77	1.62	2747	333	5	0	2	0	0	logfile
✔	9EF0	40857	2025-06-05	2024-11-19	3.33	3.49	3.32	3.5	0.004	0.59	0.0	0.04	16.92	0.00	2.198	10.63	0.96	3.6	96.4	0.0	-0.60	0.70	0.79	1.99	3.5	0.004	0.67	0.0	0.04	17.98	0.00	2.485	10.63	3.25	5.4	94.6	0.0	-0.64	0.83	0.70	0.80	2.41	4993	613	2	0	2	0	0	logfile
✔	9HG5	52128	2025-06-27	2024-11-19	2.82	3.64	3.04	3.4	0.003	0.59	0.0	0.04	16.43	0.00	1.983	5.41	1.21	3.1	96.8	0.1	0.21	0.70	0.76	2.24	3.4	0.002	0.52	0.0	0.04	16.71	0.00	2.355	3.75	1.26	2.6	97.3	0.0	0.65	0.75	0.72	0.80	2.97	31980	2085	6	0	0	0	15755	logfile
✔	9HG8	52130	2025-06-26	2024-11-19	2.9	3.69	3.11	3.4	0.004	0.65	0.0	0.04	14.78	0.01	2.121	7.23	1.16	3.1	96.7	0.2	0.16	0.71	0.77	2.72	3.5	0.002	0.55	0.0	0.04	15.66	0.00	2.414	3.90	0.80	2.7	97.3	0.0	0.57	0.71	0.72	0.82	2.67	30038	1953	6	0	0	0	14802	logfile
✔	9KNX	62465	2025-06-04	2024-11-19	3.72	4.01	3.77	4.0	0.011	1.06	0.0	0.06	16.42	0.01	2.250	9.84	0.38	3.7	96.3	0.0	-1.45	0.48	0.70	1.20	4.0	0.003	0.55	0.0	0.04	16.50	0.00	2.474	8.17	2.26	1.9	98.1	0.0	2.30	0.73	0.46	0.72	0.65	2675	329	4	0	1	0	0	logfile
✔	9EEA	47953	2025-06-13	2024-11-18	3.36	4.21	3.71	4.2	0.003	0.59	0.0	0.04	17.73	0.00	2.020	11.52	0.40	6.8	93.2	0.0	-0.74	0.69	0.63	0.54	4.2	0.003	0.67	0.0	0.04	16.68	0.00	2.389	10.83	4.44	5.4	94.6	0.0	-0.34	0.98	0.71	0.72	0.89	14648	1011	6	0	1	0	7098	logfile
✔	9EE8	47951	2025-06-13	2024-11-18	2.63	3.33	2.91	3.2	0.005	0.61	1.0	0.04	16.08	0.00	2.221	4.17	0.26	2.7	97.3	0.0	1.26	0.73	0.87	3.21	3.2	0.003	0.52	0.0	0.04	16.32	0.00	2.397	3.02	1.85	2.8	97.2	0.0	1.57	0.56	0.69	0.86	3.20	14831	1025	6	0	1	0	7180	logfile
✔	9EE9	47952	2025-06-13	2024-11-18	3.16	3.84	3.49	3.9	0.003	0.57	0.0	0.04	17.06	0.00	2.079	10.62	0.00	4.6	95.3	0.1	0.59	0.70	0.77	1.15	3.9	0.004	0.61	0.0	0.04	16.60	0.00	2.340	8.59	2.82	6.5	93.4	0.1	0.68	0.98	0.70	0.77	1.19	14746	1020	6	0	1	0	7140	logfile
✔	9EDC	47944	2025-06-04	2024-11-16	4.18	5.14	4.40	5.9	0.005	0.88	0.0	0.05	13.87	0.01	2.263	2.91	0.00	2.5	97.3	0.2	-1.43	0.70	0.54	—	5.8	0.004	0.78	0.0	0.05	14.00	0.00	2.372	16.09	0.24	4.5	95.3	0.2	-0.23	1.81	0.73	0.61	—	4062	498	3	0	1	0	0	logfile
✔	9ED1	47930	2025-06-13	2024-11-15	3.5	3.78	3.45	3.7	0.002	0.49	0.0	0.04	13.06	0.00	2.271	2.96	0.00	2.6	97.4	0.0	-1.17	0.67	0.81	1.84	3.7	0.004	0.56	0.0	0.04	15.50	0.00	2.267	2.14	2.36	3.7	96.3	0.0	-0.37	0.37	0.68	0.83	1.27	15449	2020	14	0	17	0	0	logfile
✔	9HE1	52074	2025-06-20	2024-11-13	3.0	3.47	3.06	3.4	0.002	0.43	0.0	0.04	8.80	0.00	1.521	3.83	0.39	2.7	97.3	0.0	0.63	0.63	0.75	2.65	3.4	0.003	0.55	0.0	0.04	12.07	0.00	2.349	3.87	0.55	5.1	94.9	0.0	-0.28	0.60	0.64	0.77	2.48	23241	1511	6	0	0	0	11404	logfile
✔	9KJU	62377	2025-06-06	2024-11-12	2.7	2.86	2.87	2.8	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.57	0.64	1.90	2.8	0.003	0.71	0.0	0.04	14.95	0.00	2.498	5.92	1.79	7.8	92.1	0.1	1.08	0.68	0.68	0.88	1.58	7398	936	8	0	8	1	0	logfile
✔	9HDD	52061	2025-06-11	2024-11-12	3.62	5.09	3.72	4.0	0.011	1.80	0.0	0.08	14.69	0.01	2.527	1.51	0.14	4.4	95.6	0.0	-2.50	0.88	0.77	-0.32	4.1	0.002	0.58	0.0	0.03	16.21	0.00	2.336	6.61	1.52	1.6	98.0	0.4	3.76	0.96	0.87	0.77	-0.32	12556	818	2	0	0	0	6260	logfile
✔	9KJT	62375	2025-06-14	2024-11-12	3.84	4.76	3.86	4.1	0.006	0.66	0.0	0.04	16.58	0.00	2.198	16.75	0.11	5.4	94.6	0.0	1.01	0.93	0.88	1.61	4.2	0.003	0.58	0.0	0.04	16.99	0.00	2.551	10.68	2.32	3.7	96.3	0.0	1.34	0.32	0.92	0.86	1.61	16413	2130	3	0	0	0	0	logfile
✔	9KK6	62383	2025-06-07	2024-11-12	3.7	3.82	3.73	3.8	0.003	0.62	0.0	0.04	15.11	0.00	2.031	8.58	0.00	9.0	91.0	0.0	1.23	0.65	0.80	1.71	3.8	0.003	0.67	0.0	0.04	17.39	0.00	1.926	7.75	2.20	8.4	91.6	0.0	1.08	0.47	0.65	0.81	1.45	9066	1170	2	0	6	0	0	logfile
✔	9HDQ	52072	2025-06-09	2024-11-12	2.45	2.20	2.50	2.4	0.007	1.15	0.0	0.09	19.15	0.01	2.353	1.10	0.00	0.4	99.6	0.0	-1.18	0.66	0.81	4.58	2.3	0.003	0.58	0.0	0.04	20.18	0.00	2.604	2.90	0.74	1.9	98.1	0.0	1.97	3.97	0.68	0.82	3.40	10261	1025	8	85	1	0	0	logfile
✔	9KJC	62366	2025-06-08	2024-11-12	3.6	3.85	3.65	3.8	0.003	0.68	0.0	0.04	14.66	0.01	2.206	9.65	0.63	7.7	92.3	0.0	-0.15	0.64	0.77	0.95	3.8	0.003	0.68	0.0	0.04	15.96	0.00	2.461	8.88	1.47	7.8	92.2	0.0	0.15	0.53	0.64	0.80	0.56	9015	1168	2	0	1	0	0	logfile

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