Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EHM	48060	2025-06-20	2024-11-23	4.2	3.92	4.13	3.7	0.007	1.04	0.0	0.15	19.59	0.01	1.433	19.55	0.72	6.3	93.7	0.0	-2.26	0.85	0.76	—	3.7	0.003	0.84	0.0	0.05	13.72	0.00	2.319	13.56	0.04	6.0	94.0	0.0	-1.71	1.35	0.86	0.78	—	23943	2898	47	0	99	0	0	logfile
✔	9KPF	62486	2025-06-07	2024-11-22	3.15	2.28	3.24	2.1	0.003	0.64	0.0	0.04	16.07	0.00	2.208	9.92	0.10	4.6	95.4	0.0	0.89	0.76	0.74	2.42	2.1	0.003	0.63	0.0	0.04	16.91	0.00	2.465	5.86	4.39	4.3	95.7	0.0	0.94	0.33	0.75	0.74	2.25	8914	1127	6	0	1	0	0	logfile
✔	9KPD	62484	2025-06-06	2024-11-22	2.84	2.22	3.01	2.0	0.012	1.09	3.0	0.08	16.05	0.01	2.003	26.15	2.56	4.3	95.2	0.5	0.01	0.75	0.75	2.97	2.0	0.005	0.66	0.0	0.04	16.63	0.00	2.539	10.24	2.89	3.4	96.5	0.1	0.67	0.46	0.77	0.78	2.84	8237	1035	6	0	1	0	0	logfile
✔	9HHQ	52173	2025-06-04	2024-11-22	3.5	4.08	3.44	3.9	0.003	0.72	0.0	0.05	14.16	0.01	2.283	7.67	0.00	3.3	96.7	0.0	-0.94	0.54	0.75	1.70	3.9	0.005	0.90	0.0	0.05	17.14	0.01	2.473	18.64	3.62	4.4	95.6	0.0	-0.24	2.25	0.56	0.77	0.64	2818	369	1	0	0	0	0	logfile
✘	9EH8	48048	2025-06-25	2024-11-22	2.0	2.10	2.02	2.1	0.007	1.07	3.0	0.07	15.40	0.01	2.200	1.84	0.65	2.1	97.8	0.1	0.44	0.76	0.88	6.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29118	3498	48	0	135	813	0	logfile
✔	9KPH	62487	2025-06-09	2024-11-22	3.93	4.09	3.97	3.8	0.008	1.22	0.0	0.14	26.76	0.00	2.162	6.65	0.00	0.0	0.0	0.0	—	0.67	0.45	—	4.0	0.006	0.97	0.0	0.05	27.27	0.01	2.131	29.56	0.00	0.0	0.0	0.0	—	2.16	0.73	0.62	—	10618	0	2	498	0	0	0	logfile
✔	9KPE	62485	2025-06-07	2024-11-22	3.35	2.36	3.59	2.1	0.004	0.76	0.0	0.05	15.54	0.00	2.151	20.23	0.00	5.9	94.1	0.0	-0.21	0.72	0.71	2.13	2.1	0.004	0.70	0.0	0.05	16.34	0.00	2.464	14.76	4.29	5.6	94.4	0.0	0.09	1.50	0.72	0.71	2.04	8916	1127	6	0	1	0	0	logfile
✔	9EGE	47987	2025-06-17	2024-11-21	2.8	3.42	2.90	3.2	0.004	0.58	0.0	0.04	14.54	0.00	1.991	4.63	0.88	3.2	96.8	0.0	1.04	0.59	0.78	2.58	3.2	0.003	0.54	0.0	0.04	15.50	0.00	2.286	3.43	0.49	3.4	96.6	0.0	1.74	0.58	0.61	0.80	2.39	19224	1230	1	0	0	0	9648	logfile
✘	9EGQ	47995	2025-06-13	2024-11-21	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15267	1875	10	0	7	0	0	logfile
✘	9EGM	47991	2025-06-12	2024-11-21	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14255	1690	15	0	15	330	0	logfile
✔	9EGo	47992	2025-06-07	2024-11-21	3.2	3.35	3.11	3.4	0.008	1.13	0.0	0.06	11.25	0.01	1.837	2.76	0.34	6.0	93.9	0.1	-4.60	0.66	0.79	3.71	3.4	0.002	0.61	0.0	0.04	13.99	0.00	2.494	2.82	2.05	3.4	96.6	0.0	-1.29	0.66	0.67	0.85	2.20	8469	1110	6	0	1	0	0	logfile
✔	9EGT	47997	2025-06-12	2024-11-21	2.57	2.85	2.58	2.8	0.002	0.48	0.0	0.04	12.75	0.00	2.231	5.21	0.67	1.5	98.5	0.0	0.41	0.68	0.87	4.51	2.8	0.003	0.51	0.0	0.04	14.97	0.00	2.224	6.59	1.28	1.8	98.2	0.0	1.76	0.79	0.70	0.88	4.34	14169	1690	15	0	5	269	0	logfile
✔	9EGS	47996	2025-06-14	2024-11-21	2.45	2.71	2.44	2.7	0.002	0.48	0.0	0.04	12.60	0.00	2.329	5.61	0.30	1.9	98.1	0.0	0.65	0.73	0.87	4.69	2.7	0.004	0.58	0.0	0.04	14.44	0.00	2.267	7.91	0.48	1.3	98.7	0.0	1.36	0.22	0.74	0.88	4.43	15805	1885	15	0	15	270	0	logfile
✔	9HH1	52168	2025-06-04	2024-11-20	3.9	4.10	1.62	4.0	0.015	1.45	0.0	0.08	10.77	0.01	1.889	13.25	0.56	2.5	97.5	0.0	-1.27	0.59	0.43	1.23	4.0	0.003	0.86	0.0	0.05	15.53	0.00	2.455	17.37	4.17	2.9	97.1	0.0	-0.56	2.34	0.69	0.63	1.54	3300	412	2	0	0	0	0	logfile
✔	9KoM	62478	2025-06-04	2024-11-20	3.2	3.48	3.34	3.5	0.004	0.79	0.0	0.04	17.93	0.00	2.245	6.15	0.81	4.6	95.4	0.0	0.32	0.26	0.66	1.35	3.5	0.003	0.56	0.0	0.04	18.53	0.00	2.623	4.61	5.24	2.5	97.5	0.0	1.67	1.24	0.40	0.83	0.94	2268	291	1	0	0	0	0	logfile
✘	9EFZ	47982	2025-06-12	2024-11-20	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14477	1700	15	0	15	382	0	logfile
✔	9HGS	52166	2025-06-04	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.45	0.0	0.05	18.09	0.00	2.666	1.85	3.77	9.9	90.1	0.0	-4.19	0.48	0.26	0.76	4.30	526	75	1	0	0	0	0	logfile
✔	9HGR	52165	2025-06-04	2024-11-20	2.7	2.06	2.31	2.7	0.003	0.47	0.0	0.05	14.29	0.00	2.569	2.04	0.00	3.0	97.0	0.0	-3.44	0.27	0.76	6.46	2.7	0.004	0.52	0.0	0.05	16.15	0.00	2.627	0.51	5.32	8.2	91.8	0.0	-3.74	0.41	0.27	0.77	6.92	960	142	2	0	0	0	0	logfile
✔	9HG8	52130	2025-06-26	2024-11-19	2.9	3.69	3.11	3.4	0.004	0.65	0.0	0.04	14.78	0.01	2.121	7.23	1.16	3.1	96.7	0.2	0.16	0.71	0.77	2.72	3.5	0.002	0.55	0.0	0.04	15.66	0.00	2.414	3.90	0.80	2.7	97.3	0.0	0.57	0.71	0.72	0.82	2.67	30038	1953	6	0	0	0	14802	logfile
✔	9HG9	52131	2025-06-22	2024-11-19	2.88	3.62	3.05	3.4	0.003	0.51	0.0	0.04	13.88	0.00	2.046	4.81	0.28	3.2	96.8	0.0	0.83	0.69	0.81	3.73	3.4	0.003	0.55	0.0	0.04	15.11	0.00	2.116	3.41	1.18	3.4	96.6	0.0	0.78	0.47	0.68	0.81	3.52	26335	1708	8	0	1	0	12929	logfile

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