Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EKC	48119	2025-06-09	2024-12-02	3.8	4.21	3.74	18.0	0.004	0.86	0.0	0.03	15.02	0.01	2.625	5.52	0.10	0.8	99.2	0.0	1.16	0.58	0.87	0.29	19.0	0.002	0.63	0.0	0.02	17.13	0.00	2.623	5.21	4.31	0.0	100.0	0.0	7.42	1.21	0.59	0.87	-0.70	10659	1326	102	0	0	0	0	logfile
✔	9EKF	48120	2025-06-15	2024-12-02	2.68	2.85	2.69	2.9	0.005	0.94	0.0	0.06	16.75	0.01	0.836	4.34	2.15	4.2	95.8	0.0	-1.19	0.46	0.67	4.39	2.9	0.004	0.71	0.0	0.05	16.84	0.00	2.547	5.13	3.17	4.0	96.0	0.0	-0.48	1.50	0.69	0.89	4.32	17537	2145	15	0	33	0	0	logfile
✔	9EKB	48117	2025-06-12	2024-12-02	3.65	4.27	3.76	4.2	0.005	1.02	0.0	0.04	9.44	0.00	2.205	4.69	1.91	3.5	96.4	0.1	1.07	0.77	0.76	1.86	4.2	0.003	0.55	0.0	0.04	12.57	0.00	2.573	4.80	1.98	3.3	96.5	0.1	1.65	1.29	0.78	0.77	1.27	13324	1694	5	0	2	0	0	logfile
✔	9KT3	62556	2025-06-29	2024-12-01	3.63	4.29	3.67	3.5	0.003	0.56	0.0	0.05	9.36	0.00	2.184	5.72	3.33	6.0	93.9	0.1	-3.32	0.80	0.71	1.66	3.5	0.003	0.66	0.0	0.04	12.06	0.00	2.444	7.86	1.10	6.1	93.9	0.0	-0.65	0.80	0.85	0.80	1.73	34950	4524	9	0	0	0	0	logfile
✔	9HJC	52212	2025-06-06	2024-11-28	2.1	2.26	2.09	2.3	0.006	0.71	0.0	0.05	14.74	0.00	2.469	2.34	0.00	2.5	97.5	0.0	1.01	0.60	0.79	6.45	2.3	0.003	0.50	0.0	0.04	16.02	0.00	1.851	1.69	0.23	2.3	97.7	0.0	0.78	0.25	0.60	0.79	6.07	7674	486	4	0	4	0	3806	logfile
✔	9KR7	62521	2025-06-04	2024-11-27	3.29	3.48	3.33	3.5	0.004	0.57	0.0	0.04	13.53	0.01	2.195	7.91	0.22	4.2	95.8	0.0	0.41	0.64	0.84	2.51	3.5	0.003	0.55	0.0	0.04	15.46	0.00	2.572	6.97	2.47	2.6	97.4	0.0	1.94	0.34	0.62	0.83	2.58	4261	534	2	0	1	7	0	logfile
✔	9KR6	62520	2025-06-05	2024-11-27	2.77	2.95	2.78	3.0	0.011	0.93	0.0	0.06	14.33	0.01	1.801	7.12	0.78	7.6	91.9	0.5	-3.04	0.74	0.84	4.83	3.0	0.003	0.61	0.0	0.04	16.89	0.00	2.570	5.04	2.86	4.9	95.1	0.0	-0.05	0.50	0.69	0.84	4.06	6760	830	4	0	0	0	0	logfile
✔	9KRH	62527	2025-06-04	2024-11-27	3.4	3.59	3.40	3.6	0.005	0.72	1.0	0.04	13.22	0.00	2.213	14.04	0.23	4.5	95.3	0.2	0.13	0.58	0.76	2.46	3.6	0.004	0.71	0.0	0.04	16.65	0.00	2.267	12.73	3.86	3.8	96.2	0.0	1.48	0.86	0.59	0.79	1.74	4231	532	2	0	3	0	0	logfile
✔	9KRG	62526	2025-06-14	2024-11-27	2.9	3.13	2.98	3.2	0.004	0.79	0.0	0.04	17.94	0.00	2.244	7.38	0.81	4.6	95.4	0.0	0.33	0.35	0.55	0.52	3.2	0.003	0.80	1.0	0.04	18.33	0.00	2.467	3.67	4.55	3.0	97.0	0.0	2.21	0.71	0.57	0.78	0.81	15876	2037	7	0	0	0	0	logfile
✔	9KQJ	62506	2025-06-06	2024-11-26	2.95	3.19	3.04	3.3	0.005	0.62	0.0	0.04	26.55	0.00	2.099	9.36	3.24	2.3	97.7	0.0	-0.91	0.57	0.79	3.55	3.3	0.003	0.60	0.0	0.04	21.05	0.00	2.352	6.77	1.92	1.9	98.1	0.0	1.55	0.34	0.56	0.79	3.59	7056	754	4	0	22	0	0	logfile
✔	9KQi	62505	2025-06-06	2024-11-26	3.02	3.23	3.12	3.4	0.005	0.56	0.0	0.04	25.03	0.00	2.205	9.25	0.44	1.7	98.3	0.0	-0.77	0.58	0.81	3.72	3.4	0.005	0.60	0.0	0.04	21.17	0.00	2.408	7.51	3.82	1.9	98.1	0.0	1.28	1.10	0.56	0.80	3.56	7082	756	4	0	22	0	0	logfile
✔	9Eio	48088	2025-06-13	2024-11-26	3.62	3.88	3.51	3.8	0.002	0.54	0.0	0.04	14.22	0.00	2.208	4.41	0.00	8.4	91.6	0.0	-2.10	0.56	0.69	1.46	3.8	0.004	0.96	1.0	0.04	16.45	0.00	2.251	5.10	2.18	7.9	91.9	0.1	-1.62	0.52	0.56	0.69	0.74	14654	1924	18	0	12	4	0	logfile
✔	9EiJ	48085	2025-06-15	2024-11-26	3.3	3.83	3.29	3.5	0.002	0.65	0.0	0.04	13.60	0.01	2.236	1.92	0.96	3.3	96.6	0.0	0.53	0.67	0.79	2.34	3.5	0.004	0.76	0.0	0.04	16.24	0.00	2.347	7.55	1.58	2.5	97.5	0.0	1.65	1.02	0.68	0.81	1.70	16970	2121	22	0	9	0	0	logfile
✔	9KQE	62501	2025-06-04	2024-11-25	3.0	3.27	3.03	3.2	0.008	0.87	0.0	0.05	13.46	0.01	2.237	9.43	1.68	3.3	96.7	0.0	-2.23	0.53	0.78	2.13	3.2	0.004	0.81	0.0	0.04	16.83	0.00	2.579	11.17	2.35	1.4	98.6	0.0	1.57	1.48	0.55	0.80	1.15	2795	373	2	0	1	0	0	logfile
✔	9KQC	62500	2025-06-05	2024-11-25	3.36	4.35	3.40	4.0	0.005	0.90	0.0	0.05	18.53	0.00	2.172	23.79	8.51	5.3	93.7	1.0	0.10	0.64	0.74	1.80	4.0	0.003	0.71	0.0	0.04	17.48	0.00	2.179	11.43	5.48	2.0	97.8	0.2	1.24	1.71	0.67	0.83	2.18	4924	607	3	0	2	0	0	logfile
✔	9Ei2	48074	2025-06-04	2024-11-25	2.8	2.23	3.03	1.9	0.004	0.58	0.0	0.04	19.85	0.00	2.155	11.31	4.96	7.6	91.6	0.8	-0.10	0.54	0.77	2.52	1.9	0.004	0.59	0.0	0.04	19.62	0.00	2.585	8.77	4.96	6.8	92.4	0.8	0.11	0.25	0.54	0.79	2.38	2182	267	2	0	0	0	0	logfile
✔	9KQA	62498	2025-06-04	2024-11-25	3.28	3.78	3.25	3.7	0.005	0.79	0.0	0.04	17.32	0.01	2.211	11.22	0.35	5.7	94.3	0.0	-2.72	0.46	0.72	1.02	3.7	0.003	0.71	0.0	0.04	17.55	0.00	2.510	6.23	2.80	3.2	96.8	0.0	1.60	0.55	0.47	0.73	0.81	2783	377	2	0	1	0	0	logfile
✔	9EHZ	48071	2025-06-27	2024-11-25	2.6	2.14	2.52	1.9	0.004	0.76	1.0	0.07	13.98	0.01	1.481	11.70	4.45	5.0	94.7	0.3	0.33	0.82	0.83	3.99	1.9	0.004	0.74	1.0	0.05	17.43	0.00	1.961	11.13	2.79	5.1	94.6	0.2	0.17	1.24	0.82	0.83	3.41	32125	3906	22	46	9	0	0	logfile
✔	9KQF	62503	2025-06-06	2024-11-25	3.25	3.45	3.34	3.5	0.005	0.62	0.0	0.04	26.74	0.00	2.176	11.57	0.29	4.0	96.0	0.0	0.73	0.55	0.80	3.54	3.5	0.003	0.55	0.0	0.04	20.71	0.00	2.536	8.99	5.16	2.9	97.1	0.0	2.95	1.11	0.54	0.79	3.20	7066	754	4	0	20	0	0	logfile
✔	9KPo	62489	2025-06-09	2024-11-23	3.98	4.14	4.03	3.9	0.008	1.23	0.0	0.14	26.22	0.00	2.169	6.40	0.00	0.0	0.0	0.0	—	0.65	0.44	—	4.0	0.007	1.04	0.0	0.05	27.01	0.01	2.161	37.15	0.00	0.0	0.0	0.0	—	2.01	0.73	0.61	—	10618	0	2	498	0	0	0	logfile

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