Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9HNW	52316	2025-06-08	2024-12-11	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9349	1178	6	0	2	0	0	logfile
✔	9KZJ	62664	2025-06-20	2024-12-10	3.5	4.05	3.04	3.6	0.003	0.66	0.0	0.04	15.23	0.00	2.133	6.04	1.10	3.5	95.8	0.7	-1.38	0.50	0.82	2.61	3.6	0.006	0.72	0.0	0.05	15.88	0.00	2.392	4.73	2.74	4.7	95.0	0.4	-1.10	2.80	0.51	0.91	2.72	24095	3145	14	0	0	0	0	logfile
✔	9MFU	48237	2025-06-05	2024-12-10	2.87	2.58	2.40	2.4	0.042	4.25	42.0	0.20	21.84	0.01	2.598	12.83	13.51	23.3	76.7	0.0	-3.12	0.69	0.91	5.53	2.2	0.124	3.60	46.0	0.25	24.99	0.02	2.238	5.40	8.30	26.4	73.3	0.2	-6.58	0.84	0.70	0.94	5.22	6776	616	98	0	98	0	0	logfile
✔	9MGA	48244	2025-06-04	2024-12-10	2.85	2.34	2.53	2.1	0.035	3.30	0.0	0.09	18.89	0.02	2.556	9.86	5.88	14.3	85.7	0.0	-5.15	0.62	0.81	5.89	1.9	0.154	4.68	32.0	0.29	22.93	0.04	1.916	13.36	10.92	22.1	77.2	0.7	-5.81	1.34	0.69	0.91	4.62	4599	420	63	0	63	0	0	logfile
✔	9KY5	62640	2025-06-06	2024-12-08	3.6	4.04	3.69	4.0	0.005	0.71	0.0	0.04	14.69	0.00	2.204	15.18	1.27	7.0	93.0	0.0	-3.42	0.57	0.80	1.78	4.0	0.003	0.70	0.0	0.04	16.60	0.00	2.464	9.16	2.53	5.4	94.6	0.0	0.34	0.98	0.52	0.76	1.38	7277	935	3	0	0	0	0	logfile
✔	9HM9	52289	2025-06-13	2024-12-07	3.4	4.51	3.41	3.5	0.003	0.73	0.0	0.05	13.19	0.01	2.003	4.42	0.00	3.7	96.3	0.0	-1.83	0.76	0.85	3.47	3.6	0.004	0.73	0.0	0.04	13.88	0.00	1.952	6.87	0.25	2.8	97.2	0.0	1.32	1.19	0.78	0.90	2.50	14798	1876	11	0	10	0	0	logfile
✘	9MEK	48216	2025-06-04	2024-12-06	2.85	3.15	2.88	3.1	0.003	0.53	0.0	0.03	14.27	0.00	2.306	6.84	1.68	2.1	97.9	0.0	3.48	0.58	0.84	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3594	478	4	0	6	0	0	logfile
✔	9MEL	48217	2025-06-04	2024-12-06	3.17	3.39	3.13	3.4	0.004	0.73	0.0	0.05	20.72	0.00	2.206	4.44	1.72	3.9	96.1	0.0	3.40	0.56	0.82	1.52	3.4	0.002	0.54	0.0	0.03	15.14	0.00	2.535	2.78	2.30	2.6	97.4	0.0	4.24	0.28	0.57	0.82	2.21	3589	476	4	0	4	0	0	logfile
✔	9KWi	62611	2025-06-08	2024-12-05	3.19	3.45	3.24	3.4	0.003	0.52	0.0	0.04	16.98	0.00	1.952	8.06	2.94	3.0	96.9	0.2	1.98	0.69	0.86	2.15	3.4	0.003	0.52	0.0	0.04	17.29	0.00	1.939	6.37	3.67	3.1	96.8	0.1	2.31	1.71	0.70	0.87	1.93	9127	1190	4	0	4	0	0	logfile
✔	9MCW	48163	2025-06-11	2024-12-05	2.9	2.98	2.93	3.0	0.015	1.57	0.0	0.16	22.43	0.02	2.298	0.05	0.00	0.0	0.0	0.0	—	0.74	0.81	—	3.0	0.008	0.81	0.0	0.04	23.17	0.01	2.457	3.33	0.00	0.0	0.0	0.0	—	1.11	0.80	0.89	—	13206	0	2	616	0	0	0	logfile
✔	9ELY	48162	2025-06-04	2024-12-05	2.9	3.17	2.91	3.1	0.003	0.70	0.0	0.06	21.92	0.01	2.339	0.15	0.00	0.0	0.0	0.0	—	0.62	0.82	—	3.1	0.006	0.81	0.0	0.05	22.09	0.01	2.533	3.38	0.00	0.0	0.0	0.0	—	0.96	0.67	0.90	—	4334	0	1	202	0	0	0	logfile
✔	9ELi	48150	2025-06-22	2024-12-04	2.82	3.02	2.91	3.1	0.019	1.30	3.0	0.06	13.85	0.01	2.066	2.18	0.00	3.3	96.7	0.0	0.03	0.68	0.86	3.16	3.0	0.003	0.62	0.0	0.04	14.52	0.00	2.450	5.10	1.33	2.6	97.1	0.3	0.20	0.44	0.70	0.84	3.04	25509	3153	21	0	57	0	0	logfile
✔	9ELo	48157	2025-06-22	2024-12-04	2.74	2.96	2.82	3.0	0.008	1.31	3.0	0.07	13.70	0.02	1.564	5.75	0.11	2.9	97.1	0.0	0.80	0.62	0.83	4.00	3.0	0.007	0.74	0.0	0.05	14.58	0.01	2.420	6.15	2.38	4.0	96.0	0.0	0.20	1.15	0.63	0.85	3.69	25446	3150	21	0	54	0	0	logfile
✔	9ELN	48156	2025-06-22	2024-12-04	2.93	3.18	3.03	3.2	0.012	1.41	4.0	0.07	14.55	0.01	1.539	6.02	0.25	4.2	95.7	0.0	0.54	0.68	0.84	3.22	3.2	0.004	0.80	0.0	0.05	14.79	0.00	2.402	6.05	2.18	4.0	96.0	0.0	0.17	0.96	0.69	0.87	3.11	25446	3150	20	0	56	0	0	logfile
✔	9ELG	48148	2025-06-04	2024-12-04	3.71	3.92	3.68	3.9	0.008	1.33	3.0	0.09	13.82	0.02	2.006	2.76	0.00	3.8	96.2	0.0	0.30	0.63	0.77	3.66	3.9	0.004	0.73	0.0	0.05	13.56	0.00	2.506	7.79	3.52	4.0	96.0	0.0	-0.92	0.56	0.66	0.80	2.81	4255	510	5	0	11	0	0	logfile
✔	9ELH	48149	2025-06-22	2024-12-04	2.98	3.23	3.07	3.2	0.008	1.23	0.0	0.06	14.91	0.01	1.909	5.32	0.04	3.6	96.4	0.0	0.59	0.69	0.86	3.76	3.2	0.003	0.67	0.0	0.05	14.45	0.00	2.216	5.62	1.96	3.4	96.6	0.1	0.36	0.47	0.66	0.85	3.25	25512	3152	20	0	59	0	0	logfile
✔	9ELE	48146	2025-06-05	2024-12-04	3.16	3.42	3.20	3.4	0.006	1.27	0.0	0.06	13.42	0.01	1.965	2.91	0.00	1.0	99.0	0.0	0.59	0.68	0.85	4.29	3.4	0.003	0.57	0.0	0.04	14.41	0.00	2.546	5.34	2.04	1.4	98.6	0.0	1.38	0.49	0.65	0.86	3.78	6529	780	8	0	13	0	0	logfile
✔	9KUS	62579	2025-06-05	2024-12-04	3.42	3.70	3.45	3.8	0.003	0.60	0.0	0.04	15.11	0.01	2.305	4.44	0.33	2.0	98.0	0.0	0.84	0.67	0.81	2.58	3.8	0.003	0.61	0.0	0.04	16.22	0.01	2.622	4.08	2.67	2.7	97.3	0.0	2.01	0.83	0.66	0.83	2.11	5488	710	2	0	0	0	0	logfile
✔	9ELQ	48159	2025-06-22	2024-12-04	2.64	2.80	2.68	2.8	0.008	1.36	9.0	0.07	13.79	0.02	1.468	7.59	0.11	2.8	97.2	0.0	0.61	0.64	0.85	3.75	2.8	0.003	0.62	0.0	0.05	14.86	0.00	2.433	6.34	1.52	2.3	97.5	0.2	0.53	0.89	0.66	0.86	3.51	25479	3150	21	0	57	0	0	logfile
✔	9ELP	48158	2025-06-20	2024-12-04	2.94	3.17	3.10	3.2	0.008	1.23	2.0	0.07	14.38	0.01	1.127	2.69	0.16	3.3	96.7	0.0	0.61	0.66	0.84	3.60	3.2	0.003	0.62	0.0	0.04	14.29	0.00	2.494	4.95	1.29	3.3	96.6	0.1	0.38	0.52	0.64	0.85	3.24	23543	2916	21	0	54	0	0	logfile

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