Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JSB	61769	2025-06-10	2024-09-30	2.93	3.10	2.93	3.2	0.004	0.78	0.0	0.05	19.71	0.01	2.088	7.84	1.59	10.9	89.1	0.0	-3.47	0.59	0.62	0.88	3.2	0.003	0.66	0.0	0.04	19.62	0.00	2.026	11.25	4.60	10.5	89.5	0.0	-2.69	0.42	0.60	0.68	1.07	11436	1404	8	10	2	0	0	logfile
✔	9JSH	61773	2025-06-22	2024-09-30	3.32	3.90	3.56	3.6	0.003	0.55	0.0	0.05	14.25	0.00	2.191	7.22	0.07	4.3	95.7	0.0	-0.73	0.80	0.75	2.58	3.6	0.005	0.62	0.0	0.05	15.56	0.00	2.119	7.82	1.36	5.1	94.9	0.0	-0.42	0.56	0.88	0.90	2.48	26198	3397	14	0	21	0	0	logfile
✔	9JSP	61780	2025-06-05	2024-09-30	3.34	3.52	3.35	3.5	0.004	0.82	0.0	0.05	20.40	0.01	2.250	6.91	0.87	11.8	88.2	0.0	-2.83	0.61	0.61	0.84	3.5	0.003	0.68	0.0	0.04	20.53	0.00	2.368	9.27	4.19	10.7	89.3	0.0	-1.82	0.39	0.62	0.70	1.16	5862	673	5	22	1	0	0	logfile
✔	9JS4	61766	2025-06-04	2024-09-30	3.8	3.94	3.72	3.9	0.002	0.62	0.0	0.04	12.56	0.01	2.286	6.45	0.00	4.6	95.4	0.0	-1.81	0.59	0.71	2.33	3.9	0.003	0.68	0.0	0.05	14.78	0.00	2.500	7.24	3.10	6.6	93.4	0.0	-1.80	1.14	0.60	0.72	2.23	3244	417	3	0	0	0	0	logfile
✔	9JRi	61756	2025-06-04	2024-09-29	3.43	3.65	3.41	3.6	0.006	0.87	1.0	0.04	19.71	0.01	2.119	9.77	0.30	4.2	95.8	0.0	1.04	0.53	0.75	1.25	3.6	0.003	0.63	1.0	0.04	19.44	0.00	2.538	8.82	6.04	4.0	96.0	0.0	1.82	0.35	0.53	0.75	1.19	3132	385	2	0	1	0	0	logfile
✔	9JRL	61759	2025-06-04	2024-09-29	3.25	3.45	3.24	3.4	0.005	0.69	0.0	0.04	17.25	0.01	2.251	8.32	1.51	3.7	96.3	0.0	0.55	0.52	0.78	1.41	3.4	0.003	0.53	0.0	0.04	17.43	0.00	2.577	8.00	4.22	3.2	96.8	0.0	2.09	0.34	0.51	0.79	1.35	3145	386	2	0	1	0	0	logfile
✔	9JRM	61760	2025-06-04	2024-09-29	3.34	3.55	3.32	3.5	0.007	1.01	0.0	0.06	17.94	0.00	2.229	8.23	0.00	4.0	96.0	0.0	0.97	0.59	0.78	2.18	3.5	0.003	0.59	0.0	0.04	16.22	0.00	2.629	9.65	5.15	4.5	95.5	0.0	1.84	0.27	0.54	0.76	1.72	3134	384	2	0	1	0	0	logfile
✔	9JR2	61746	2025-06-08	2024-09-29	2.8	2.91	—	98.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	98.0	0.003	0.57	0.0	0.04	15.81	0.00	2.505	6.79	2.70	3.0	97.0	0.0	1.19	0.65	0.49	0.76	2.58	9418	1225	8	0	1	1	0	logfile
✔	9JR3	61747	2025-06-08	2024-09-29	2.8	2.91	—	98.0	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	98.0	0.005	0.66	0.0	0.04	15.67	0.00	2.516	8.08	3.01	3.2	96.7	0.1	0.80	0.90	0.49	0.77	2.26	9455	1228	9	0	3	1	0	logfile
✔	9GXA	51645	2025-06-07	2024-09-29	4.01	4.77	4.07	4.0	0.004	0.65	0.0	0.04	29.32	0.00	1.931	15.93	0.00	1.6	98.4	0.0	1.51	0.85	0.76	—	4.0	0.005	0.73	0.0	0.04	30.23	0.00	2.333	16.41	0.00	2.3	97.7	0.0	1.32	1.56	0.88	0.85	—	9215	574	10	224	0	0	0	logfile
✔	9JRN	61761	2025-06-04	2024-09-29	3.74	3.98	3.73	3.9	0.003	0.59	0.0	0.04	17.66	0.00	2.215	8.19	0.30	3.7	96.3	0.0	1.23	0.54	0.77	1.27	3.9	0.003	0.63	0.0	0.04	17.86	0.00	2.584	9.45	4.52	4.2	95.8	0.0	2.12	0.58	0.56	0.78	1.21	3129	386	2	0	1	0	0	logfile
✔	9JRK	61758	2025-06-04	2024-09-29	3.44	3.67	3.43	3.6	0.006	0.86	1.0	0.04	16.86	0.00	2.299	8.65	0.00	4.5	95.5	0.0	0.28	0.56	0.79	2.03	3.6	0.003	0.59	1.0	0.04	16.93	0.00	2.570	7.86	3.31	3.4	96.6	0.0	1.43	0.32	0.52	0.77	1.47	3139	386	2	0	1	0	0	logfile
✔	9JQT	61741	2025-06-05	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.1	0.003	0.54	0.0	0.04	15.19	0.00	2.618	6.84	2.83	1.8	98.2	0.0	0.55	0.33	0.54	0.79	3.25	5669	720	4	0	0	0	0	logfile
✔	9DSo	47148	2025-06-07	2024-09-28	2.85	3.10	2.88	3.2	0.004	0.54	0.0	0.04	13.12	0.00	2.209	6.26	0.00	1.5	98.5	0.0	1.43	0.63	0.83	3.69	3.2	0.005	0.56	0.0	0.04	15.98	0.00	2.312	6.04	2.07	1.7	98.3	0.0	1.85	0.90	0.63	0.84	3.59	8975	1115	4	0	1	0	0	logfile
✘	9DRX	47132	2025-06-15	2024-09-26	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17398	2121	17	0	25	0	0	logfile
✔	9GVK	51637	2025-06-08	2024-09-25	3.5	3.08	3.16	3.2	0.004	0.71	0.0	0.05	18.62	0.00	2.026	8.11	0.39	5.7	94.3	0.0	-0.64	0.72	0.83	1.37	3.2	0.003	0.62	0.0	0.04	18.40	0.00	2.035	7.19	3.00	6.2	93.8	0.0	0.11	1.06	0.71	0.81	1.35	9673	1256	6	0	4	0	0	logfile
✔	9JoZ	61690	2025-06-04	2024-09-25	2.94	3.15	2.95	3.1	0.003	0.51	0.0	0.04	16.76	0.01	2.299	8.62	0.89	3.9	96.1	0.0	1.34	0.56	0.80	2.25	3.1	0.003	0.47	0.0	0.04	16.85	0.00	2.548	7.99	2.38	3.4	96.6	0.0	2.18	0.35	0.55	0.80	1.84	3143	390	1	0	0	0	0	logfile
✔	9GVJ	51636	2025-06-15	2024-09-24	2.91	3.20	2.84	3.1	0.002	0.52	0.0	0.04	15.91	0.00	2.184	5.74	2.22	3.2	96.8	0.0	0.26	0.73	0.90	3.60	3.1	0.004	0.58	0.0	0.05	15.85	0.00	2.096	3.76	2.01	3.6	96.4	0.0	0.30	0.21	0.72	0.90	3.58	17636	2304	12	0	14	177	0	logfile
✔	9JNX	61630	2025-06-14	2024-09-24	3.0	3.52	3.07	3.2	0.006	0.69	1.0	0.04	26.30	0.00	1.990	11.19	0.17	7.3	92.6	0.2	-0.07	0.88	0.86	2.01	3.2	0.003	0.64	0.0	0.04	26.74	0.00	2.082	8.79	1.56	5.6	94.3	0.1	1.24	0.40	0.88	0.87	1.25	16809	1346	12	292	2	0	0	logfile
✔	9JNW	61629	2025-06-15	2024-09-24	2.9	3.55	2.96	3.2	0.008	0.78	0.0	0.04	26.52	0.00	1.968	15.11	0.08	7.2	92.5	0.3	-0.18	0.84	0.85	2.31	3.2	0.004	0.66	0.0	0.04	26.59	0.00	2.017	10.45	1.61	5.9	94.1	0.0	0.89	0.41	0.84	0.85	1.40	17087	1372	12	294	2	0	0	logfile

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