Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JK7	61546	2025-06-15	2024-09-15	2.9	3.10	2.95	3.1	0.005	0.67	0.0	0.05	7.69	0.00	2.218	12.11	0.00	0.8	99.2	0.0	-0.76	0.65	0.79	3.59	3.1	0.004	0.59	0.0	0.04	14.71	0.00	2.517	9.26	2.06	2.2	97.8	0.0	1.96	0.53	0.67	0.82	2.67	17820	2172	6	0	0	0	0	logfile
✔	9JK8	61547	2025-06-16	2024-09-15	2.6	2.84	2.62	2.9	0.005	0.82	0.0	0.05	9.73	0.01	2.286	13.62	0.00	3.1	96.9	0.0	-1.32	0.64	0.80	3.74	2.9	0.005	0.67	0.0	0.04	14.86	0.01	2.355	9.45	2.72	3.3	96.7	0.0	1.38	1.62	0.66	0.84	3.53	18504	2256	6	0	0	0	0	logfile
✔	9JK9	61548	2025-06-16	2024-09-15	2.2	2.48	2.29	2.5	0.006	0.97	0.0	0.05	9.35	0.01	2.249	5.96	0.30	3.0	97.0	0.0	-2.48	0.64	0.78	4.58	2.5	0.003	0.58	0.0	0.04	15.14	0.00	2.447	9.17	2.16	3.1	96.9	0.0	1.99	1.24	0.66	0.82	2.85	18582	2268	6	0	0	0	0	logfile
✔	9DMG	47003	2025-06-29	2024-09-13	2.05	2.36	2.09	2.4	0.007	0.94	0.0	0.08	17.35	0.01	2.273	3.92	0.37	1.8	98.1	0.0	1.31	0.70	0.81	5.93	2.4	0.003	0.56	0.0	0.04	14.40	0.00	2.413	4.12	1.18	2.2	97.7	0.0	1.79	0.32	0.67	0.81	5.52	33774	2049	16	0	41	0	16551	logfile
✔	9JJ6	61517	2025-06-05	2024-09-13	2.94	3.09	2.94	3.1	0.007	0.66	0.0	0.04	28.52	0.00	2.241	8.01	0.73	2.2	97.8	0.0	0.54	0.70	0.86	2.93	3.1	0.002	0.54	0.0	0.04	16.84	0.00	2.541	6.55	1.61	2.1	97.9	0.0	1.38	0.79	0.70	0.86	3.25	6314	771	3	0	6	0	0	logfile
✔	9GS9	51543	2025-06-27	2024-09-13	2.6	3.50	2.63	3.1	0.017	1.85	4.0	0.09	17.44	0.00	0.571	4.53	3.32	4.6	94.0	1.4	-2.28	0.85	0.83	3.64	3.1	0.004	0.76	1.0	0.04	17.67	0.00	1.300	6.06	1.37	3.9	95.9	0.2	0.43	1.89	0.86	0.87	3.16	31710	3723	13	110	0	0	0	logfile
✔	9JJi	61528	2025-06-08	2024-09-13	3.4	2.52	3.40	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.003	0.63	0.0	0.05	14.85	0.00	2.529	4.36	2.49	2.3	97.7	0.0	-0.56	2.00	0.61	0.81	3.20	10021	1332	4	0	0	0	0	logfile
✔	9DME	47002	2025-06-04	2024-09-13	3.2	3.04	2.64	3.3	0.035	0.82	0.0	0.07	8.68	0.01	2.273	17.68	0.00	0.0	100.0	0.0	-0.67	0.34	0.70	5.54	3.3	0.062	0.77	0.0	0.07	10.99	0.01	2.381	11.19	0.74	2.1	97.9	0.0	-1.59	1.22	0.33	0.70	5.88	2475	315	45	0	45	0	0	logfile
✔	9DM0	46994	2025-06-12	2024-09-11	2.9	3.19	2.98	3.2	0.005	0.82	0.0	0.05	14.13	0.01	2.184	4.33	0.00	2.6	97.4	0.0	-1.17	0.65	0.75	3.00	3.2	0.004	0.87	1.0	0.05	15.89	0.00	2.393	8.55	2.24	2.4	97.6	0.0	-0.39	0.85	0.65	0.80	2.96	13642	1691	17	0	21	0	0	logfile
✔	9Ji2	61492	2025-06-23	2024-09-11	3.38	3.93	3.62	3.8	0.003	0.57	0.0	0.04	19.28	0.00	2.072	10.30	0.19	4.9	95.1	0.0	-0.08	0.82	0.84	1.60	3.8	0.003	0.56	0.0	0.04	19.70	0.00	2.041	7.51	2.23	5.0	95.0	0.0	0.40	0.38	0.82	0.85	1.34	27219	3246	9	102	3	0	0	logfile
✔	9DLZ	46993	2025-06-13	2024-09-11	3.4	3.81	—	3.5	0.005	0.94	2.0	0.06	13.73	0.01	2.091	2.11	0.00	3.5	96.2	0.3	-2.70	0.91	0.89	2.57	3.4	0.003	0.56	0.0	0.04	14.72	0.00	1.957	3.38	0.95	3.3	96.7	0.1	0.89	0.95	0.92	0.90	2.07	15455	1927	11	0	4	0	0	logfile
✔	9DLX	46992	2025-06-14	2024-09-11	2.91	3.64	—	3.2	0.005	0.87	0.0	0.06	13.63	0.01	2.096	1.07	0.00	3.8	96.1	0.1	-2.34	0.91	0.90	2.92	3.3	0.002	0.59	0.0	0.04	14.65	0.00	2.033	1.90	0.71	2.7	97.3	0.1	0.69	1.27	0.91	0.90	2.48	15551	1938	11	0	4	0	0	logfile
✔	9GRC	51520	2025-06-08	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.46	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.8	0.003	0.75	0.0	0.04	16.15	0.00	2.512	13.54	1.44	6.1	93.9	0.0	-0.95	1.58	0.48	0.19	0.85	9717	1263	6	0	2	0	0	logfile
✔	9DLi	46979	2025-06-26	2024-09-11	2.7	2.92	2.74	3.0	0.013	1.66	0.0	0.09	13.12	0.01	2.469	0.00	0.36	4.2	95.8	0.0	-0.47	0.55	0.69	4.29	3.0	0.003	0.54	0.0	0.04	16.26	0.00	2.332	5.81	2.15	2.2	97.8	0.0	1.50	1.05	0.51	0.76	3.16	30300	1848	4	0	0	0	15064	logfile
✔	9DLD	46974	2025-06-20	2024-09-10	3.2	3.45	3.26	3.5	0.003	0.60	0.0	0.04	14.16	0.00	1.967	6.19	0.04	2.7	97.3	0.0	0.14	0.68	0.80	2.38	3.5	0.004	0.55	0.0	0.04	15.53	0.00	1.833	6.72	1.50	3.0	97.0	0.0	1.19	1.29	0.69	0.82	2.25	22996	3006	4	0	7	0	0	logfile
✔	9DLE	46975	2025-06-20	2024-09-10	3.4	3.75	3.55	3.7	0.003	0.60	0.0	0.04	14.33	0.00	2.019	5.76	0.00	3.0	97.0	0.0	0.10	0.74	0.79	1.75	3.7	0.003	0.57	0.0	0.04	15.81	0.00	1.991	7.64	1.46	2.6	97.4	0.0	1.02	0.37	0.74	0.80	1.79	22892	2985	4	0	5	0	0	logfile
✔	9JHP	61489	2025-06-07	2024-09-10	3.35	2.39	3.49	2.1	0.003	0.68	0.0	0.04	14.73	0.01	2.204	10.68	0.00	4.0	96.0	0.0	-0.79	0.75	0.74	1.77	2.1	0.003	0.65	0.0	0.04	16.09	0.00	2.385	5.75	3.48	4.2	95.8	0.0	0.11	0.47	0.75	0.75	1.63	8683	1129	5	0	0	0	0	logfile
✔	9DKJ	46959	2025-06-16	2024-09-09	2.8	3.08	2.89	3.1	0.003	0.63	0.0	0.04	14.02	0.00	2.048	4.06	0.00	2.0	98.0	0.0	0.38	0.69	0.83	3.18	3.1	0.002	0.50	0.0	0.04	15.86	0.00	1.981	5.91	1.19	1.5	98.5	0.0	2.30	0.95	0.69	0.84	3.13	18075	2291	2	0	6	0	0	logfile
✔	9GQo	51510	2025-06-05	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.81	0.0	0.04	18.37	0.00	1.979	17.49	3.18	6.1	93.9	0.0	-0.88	0.59	0.82	0.81	0.34	6716	880	2	0	3	0	0	logfile
✔	9JHJ	61484	2025-06-06	2024-09-09	3.2	3.66	3.24	1.8	0.005	0.77	1.0	0.05	13.23	0.00	2.208	8.68	0.15	5.2	94.8	0.0	-0.60	0.89	0.88	2.66	1.5	0.003	0.59	0.0	0.04	14.36	0.00	2.360	6.78	1.65	4.5	95.5	0.0	0.29	0.89	0.89	0.89	2.37	7761	1105	6	0	1	0	0	logfile

• ← previous
• Page 24 of 700
• next →