Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DPA	47100	2025-06-14	2024-09-20	3.0	3.66	3.07	3.5	0.007	0.85	0.0	0.05	20.53	0.01	2.196	10.74	1.56	3.6	96.4	0.0	-0.62	0.83	0.83	2.66	3.5	0.003	0.68	0.0	0.04	20.46	0.00	2.479	7.25	2.01	3.7	96.3	0.0	0.05	0.41	0.83	0.84	2.24	9878	1013	7	76	3	0	0	logfile
✔	9DP9	47099	2025-06-08	2024-09-20	4.1	5.32	4.14	4.1	0.002	0.47	0.0	0.03	24.28	0.00	1.014	17.50	0.00	0.0	0.0	0.0	—	0.92	0.83	—	4.1	0.006	0.76	0.0	0.04	25.84	0.01	1.820	39.73	0.00	0.0	0.0	0.0	—	3.41	0.93	0.89	—	9435	0	2	440	19	0	0	logfile
✔	9JMD	61598	2025-06-16	2024-09-20	2.74	3.44	2.87	3.3	0.004	0.74	0.0	0.04	16.97	0.02	2.139	7.65	0.82	3.6	96.3	0.1	0.01	0.69	0.78	2.41	3.2	0.004	0.65	0.0	0.04	16.66	0.00	2.161	6.94	1.94	3.3	96.7	0.0	0.99	1.28	0.62	0.79	3.17	18132	1149	6	0	3	2	8989	logfile
✔	9GUR	51617	2025-06-23	2024-09-20	4.2	4.93	4.48	4.2	0.003	0.63	0.0	0.05	15.21	0.00	1.737	6.42	2.62	5.9	94.0	0.1	-1.13	0.88	0.83	—	4.2	0.003	0.70	0.0	0.04	15.61	0.00	2.020	12.13	0.00	5.5	94.4	0.1	-0.12	0.71	0.89	0.84	—	27128	3271	10	73	3	0	0	logfile
✔	9DPC	47102	2025-06-11	2024-09-20	2.65	2.16	2.66	1.9	0.004	0.65	1.0	0.05	16.56	0.00	2.198	8.29	2.95	5.1	94.9	0.0	-1.16	0.82	0.83	3.47	1.9	0.005	0.67	0.0	0.05	16.64	0.00	2.495	7.21	3.23	5.8	94.2	0.0	-1.16	0.21	0.82	0.83	3.64	13370	1777	6	0	0	0	0	logfile
✘	9JLN	61591	2025-06-04	2024-09-19	2.84	3.29	2.98	3.3	0.004	0.66	0.0	0.04	16.02	0.00	2.219	6.62	0.00	3.1	96.9	0.0	1.28	0.55	0.74	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4295	521	2	0	9	0	0	logfile
✔	9DoW	47094	2025-06-15	2024-09-19	3.1	3.74	3.14	3.6	0.004	0.73	0.0	0.04	20.02	0.01	2.236	10.16	1.56	3.4	96.6	0.0	-0.31	0.77	0.72	2.30	3.6	0.003	0.58	0.0	0.04	19.72	0.00	2.449	8.19	2.56	4.1	95.9	0.0	0.01	1.12	0.81	0.81	2.40	9816	1013	8	73	3	0	0	logfile
✔	9DoF	47082	2025-06-26	2024-09-19	4.24	4.79	4.27	4.7	0.005	0.94	0.0	0.05	14.00	0.01	1.990	8.13	0.00	7.8	91.9	0.3	-1.82	0.54	0.68	—	4.7	0.004	0.72	0.0	0.04	13.89	0.01	2.349	9.66	0.00	7.4	92.4	0.2	-1.56	0.53	0.54	0.68	—	30759	1983	6	0	0	0	15408	logfile
✔	9DoU	47091	2025-06-09	2024-09-19	3.2	2.74	3.14	3.1	0.006	1.12	0.0	0.06	21.23	0.01	2.173	1.07	0.24	2.1	97.9	0.0	-0.83	0.63	0.83	3.59	3.1	0.005	0.58	0.0	0.04	21.66	0.00	2.150	4.78	0.86	2.6	97.4	0.0	0.80	0.99	0.64	0.84	2.85	10494	924	6	145	6	0	0	logfile
✔	9Do0	47070	2025-06-19	2024-09-18	2.54	3.28	2.57	3.1	0.002	0.43	0.0	0.03	14.96	0.00	2.125	2.83	0.17	1.5	98.5	0.0	1.87	0.69	0.85	3.34	3.1	0.003	0.49	0.0	0.04	14.79	0.00	2.441	2.20	0.52	1.5	98.5	0.0	2.37	1.78	0.58	0.81	3.42	22148	1394	6	0	8	104	11018	logfile
✔	9DNM	47042	2025-06-05	2024-09-17	3.47	2.46	3.46	2.1	0.004	0.63	0.0	0.04	16.43	0.01	2.222	7.96	0.18	4.7	95.3	0.0	-0.32	0.74	0.75	2.76	2.1	0.004	0.64	0.0	0.04	16.36	0.01	2.557	5.37	2.99	6.0	94.0	0.0	0.23	0.32	0.74	0.77	2.76	5235	668	4	0	1	0	0	logfile
✔	9DNG	47040	2025-06-05	2024-09-17	3.52	2.45	3.46	2.0	0.003	0.63	0.0	0.04	16.58	0.00	2.221	7.46	0.35	6.1	93.9	0.0	-0.93	0.71	0.71	2.28	2.0	0.004	0.68	0.0	0.05	17.25	0.00	2.504	7.46	3.50	5.4	94.6	0.0	-0.56	0.35	0.71	0.71	1.99	5252	675	3	0	0	0	0	logfile
✘	9GSZ	51559	2025-06-05	2024-09-16	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6018	383	2	0	1	0	3051	logfile
✔	9DMY	47020	2025-06-05	2024-09-16	2.8	2.57	2.75	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.003	0.68	0.0	0.05	18.24	0.00	2.635	13.66	2.56	6.0	94.0	0.0	-4.11	1.35	0.45	0.80	3.42	5550	690	5	0	0	0	0	logfile
✔	9GSJ	51550	2025-06-07	2024-09-16	3.6	3.94	3.69	3.9	0.003	0.73	0.0	0.04	16.58	0.00	2.108	13.67	2.49	6.8	92.7	0.4	0.30	0.62	0.80	0.84	3.8	0.003	0.71	0.0	0.04	17.22	0.00	2.365	9.52	3.94	6.9	92.8	0.3	1.37	0.48	0.62	0.80	0.73	8870	1144	4	0	2	0	0	logfile
✔	9DN5	47026	2025-06-18	2024-09-16	3.3	3.59	3.44	3.6	0.003	0.62	0.0	0.04	14.32	0.00	2.148	6.43	0.00	1.5	98.5	0.0	0.29	0.70	0.76	1.63	3.6	0.004	0.60	0.0	0.04	15.87	0.00	1.966	9.24	1.67	2.9	97.1	0.0	1.09	0.96	0.70	0.77	1.63	21000	2679	3	0	5	0	0	logfile
✔	9JKQ	61567	2025-06-07	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.003	0.54	0.0	0.04	15.85	0.00	2.584	4.68	2.08	2.8	97.2	0.0	1.23	0.91	0.67	0.84	2.92	8386	1055	6	0	1	0	0	logfile
✔	9JK6	61545	2025-06-16	2024-09-15	3.0	3.22	3.01	3.2	0.005	0.87	0.0	0.05	8.38	0.01	2.269	3.49	0.00	1.4	98.6	0.0	-2.44	0.67	0.78	3.24	3.2	0.003	0.63	0.0	0.04	15.02	0.00	2.493	7.03	3.42	3.0	97.0	0.0	1.74	1.38	0.70	0.83	2.34	18504	2256	6	0	0	0	0	logfile
✔	9JKB	61550	2025-06-08	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.003	0.72	0.0	0.04	17.41	0.00	2.522	13.35	2.47	4.3	95.7	0.0	0.35	1.32	0.79	0.82	1.08	9532	1179	5	0	0	0	0	logfile
✔	9JK9	61548	2025-06-16	2024-09-15	2.2	2.48	2.29	2.5	0.006	0.97	0.0	0.05	9.35	0.01	2.249	5.96	0.30	3.0	97.0	0.0	-2.48	0.64	0.78	4.58	2.5	0.003	0.58	0.0	0.04	15.14	0.00	2.447	9.17	2.16	3.1	96.9	0.0	1.99	1.24	0.66	0.82	2.85	18582	2268	6	0	0	0	0	logfile

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