Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LYC	63523	2025-06-08	2025-02-19	3.06	2.38	3.19	2.1	0.004	0.68	0.0	0.04	15.52	0.01	2.034	12.59	0.75	3.8	96.2	0.0	0.99	0.73	0.74	1.64	2.1	0.003	0.67	0.0	0.04	16.86	0.00	2.453	9.11	3.84	4.1	95.9	0.0	1.11	0.66	0.75	0.78	1.70	10056	1312	6	0	0	0	0	logfile
✔	9LYD	63522	2025-06-05	2025-02-19	3.66	2.79	3.59	2.8	0.004	0.81	0.0	0.04	16.60	0.01	2.188	12.83	0.17	4.0	96.0	0.0	1.24	0.72	0.74	0.54	2.8	0.003	0.78	0.0	0.04	17.14	0.00	2.507	10.49	4.29	4.2	95.6	0.1	1.40	0.41	0.72	0.74	0.75	5636	746	2	0	0	0	0	logfile
✔	9LX5	63466	2025-06-06	2025-02-17	3.6	3.83	3.56	3.8	0.004	0.59	0.0	0.05	17.83	0.00	2.230	7.68	4.22	11.4	88.6	0.0	-1.51	0.66	0.80	1.94	3.8	0.003	0.64	0.0	0.05	18.03	0.00	2.215	6.79	7.89	11.0	89.0	0.0	-1.73	0.25	0.66	0.80	2.14	7519	981	6	0	6	0	0	logfile
✔	9LWA	63436	2025-06-20	2025-02-13	3.83	3.58	3.67	3.5	0.009	0.57	0.0	0.04	13.21	0.00	1.070	22.74	0.00	1.4	98.6	0.0	0.09	0.73	0.85	2.74	3.5	0.003	0.78	2.0	0.04	16.18	0.00	2.487	6.37	1.45	2.2	97.8	0.0	-0.31	1.50	0.74	0.86	2.61	24072	3126	18	0	0	0	0	logfile
✔	9iAH	52781	2025-06-04	2025-02-10	3.17	3.15	2.12	3.2	0.008	0.78	0.0	0.05	11.66	0.00	2.501	1.54	0.00	0.0	100.0	0.0	-1.94	0.50	0.87	5.54	3.2	0.003	0.54	0.0	0.04	14.08	0.00	2.633	4.25	1.48	3.1	96.9	0.0	-2.61	0.33	0.46	0.84	5.54	1260	170	5	0	0	0	0	logfile
✔	9LU9	63392	2025-06-08	2025-02-08	3.3	3.70	3.51	3.7	0.009	1.43	3.0	0.15	19.98	0.03	2.265	8.31	11.48	1.7	98.3	0.0	-0.36	0.66	0.88	2.21	3.7	0.003	0.59	0.0	0.04	17.61	0.00	2.449	5.47	2.30	1.7	98.3	0.0	3.59	0.81	0.59	0.82	1.72	9858	1281	8	0	1	0	0	logfile
✔	9LUC	63394	2025-06-08	2025-02-08	3.5	3.84	3.62	3.9	0.010	1.49	2.0	0.09	17.83	0.03	2.239	8.46	11.92	2.6	97.3	0.1	-1.36	0.67	0.89	2.13	3.9	0.003	0.62	0.0	0.04	17.69	0.00	2.514	5.33	2.81	1.6	98.3	0.1	3.17	0.81	0.64	0.85	1.22	9584	1249	7	0	0	0	0	logfile
✔	9LUB	63393	2025-06-08	2025-02-08	3.3	3.69	3.45	3.7	0.009	1.41	3.0	0.09	17.48	0.03	2.121	9.42	10.75	2.1	97.9	0.0	-0.89	0.67	0.89	2.09	3.7	0.003	0.61	0.0	0.04	16.91	0.00	2.570	5.44	2.69	1.4	98.6	0.0	3.47	1.44	0.66	0.86	1.64	10113	1326	7	0	0	0	0	logfile
✔	9i8i	52724	2025-06-08	2025-02-05	2.75	2.58	2.76	2.5	0.003	0.94	0.0	0.05	18.88	0.01	2.054	12.11	2.32	5.5	94.5	0.0	0.11	0.75	0.75	1.06	2.7	0.003	0.82	0.0	0.04	19.68	0.01	2.529	9.31	4.99	5.4	94.6	0.0	0.48	0.66	0.76	0.77	1.04	10374	1338	6	0	0	0	0	logfile
✔	9N6B	49055	2025-06-17	2025-02-05	3.09	3.90	3.16	3.5	0.004	0.61	0.0	0.04	19.43	0.00	2.204	3.22	1.88	4.3	95.7	0.0	0.27	0.89	0.85	3.17	3.5	0.003	0.54	0.0	0.04	19.92	0.00	2.422	2.83	1.76	5.4	94.6	0.0	1.58	0.97	0.89	0.86	2.67	20486	2442	12	114	4	0	0	logfile
✔	9N71	49081	2025-06-10	2025-02-05	3.2	3.36	3.02	3.4	0.005	0.72	0.0	0.05	15.89	0.00	2.287	4.53	0.48	2.3	97.7	0.0	-0.53	0.70	0.90	4.69	3.4	0.002	0.48	0.0	0.04	16.09	0.00	2.542	2.18	2.88	2.1	97.9	0.0	-0.25	1.58	0.69	0.90	4.91	11778	1584	6	0	0	0	0	logfile
✔	9N69	49053	2025-06-17	2025-02-05	3.13	3.96	3.20	3.5	0.003	0.47	0.0	0.04	19.19	0.00	2.495	2.98	2.08	3.7	96.3	0.0	0.92	0.89	0.85	2.75	3.5	0.003	0.50	0.0	0.04	19.51	0.00	2.517	2.82	1.37	3.8	96.1	0.1	2.02	1.34	0.90	0.86	2.46	20413	2445	12	114	4	0	0	logfile
✔	9N6C	49056	2025-06-15	2025-02-05	2.99	3.76	3.09	3.4	0.002	0.51	0.0	0.04	20.20	0.00	2.540	2.69	1.81	5.1	94.8	0.1	0.20	0.89	0.85	2.79	3.4	0.003	0.54	0.0	0.04	20.35	0.00	2.532	3.56	1.88	5.5	94.3	0.1	1.21	0.99	0.88	0.85	2.39	17296	2034	10	114	3	0	0	logfile
✔	9i81	52704	2025-06-15	2025-02-04	2.98	2.88	2.84	2.9	0.005	0.71	0.0	0.24	14.90	0.01	1.903	8.12	0.00	3.8	96.2	0.0	0.09	0.79	0.83	4.04	2.9	0.003	0.54	0.0	0.04	14.66	0.00	2.291	5.92	1.37	3.8	96.2	0.0	0.83	0.48	0.79	0.85	3.71	17157	1086	5	0	3	0	8410	logfile
✔	9LSi	63356	2025-06-14	2025-02-04	3.3	4.25	3.59	3.8	0.006	0.83	0.0	0.06	14.35	0.00	2.212	8.03	0.54	4.7	95.2	0.1	-1.17	0.83	0.87	2.29	3.8	0.002	0.59	0.0	0.04	13.94	0.00	2.306	4.90	0.91	3.2	96.8	0.0	-0.02	0.37	0.82	0.87	2.01	15433	1986	11	0	16	0	0	logfile
✔	9LSH	63355	2025-06-13	2025-02-04	3.8	4.98	3.99	4.1	0.006	0.89	0.0	0.06	12.57	0.00	2.234	11.72	0.91	4.2	95.8	0.0	-0.67	0.81	0.81	1.37	4.1	0.002	0.65	0.0	0.04	13.68	0.00	2.512	8.86	1.10	3.6	96.4	0.0	0.23	0.45	0.82	0.85	1.01	15343	1981	11	0	14	0	0	logfile
✔	9i86	52708	2025-06-12	2025-02-04	2.75	3.05	2.76	3.0	0.007	0.61	0.0	0.05	15.98	0.00	2.055	6.53	0.00	2.3	97.7	0.0	-0.09	0.49	0.73	3.78	3.0	0.003	0.65	0.0	0.05	20.71	0.00	2.339	2.86	0.94	0.8	99.2	0.0	0.49	1.22	0.55	0.80	3.95	13618	810	8	40	0	0	6728	logfile
✔	9LSK	63358	2025-06-05	2025-02-04	2.9	3.78	3.03	3.6	0.004	0.68	1.0	0.05	11.95	0.00	2.185	9.35	0.31	2.1	97.9	0.0	1.52	0.69	0.88	2.76	3.6	0.003	0.61	0.0	0.04	14.36	0.00	2.616	7.60	2.14	2.2	97.8	0.0	2.15	0.39	0.66	0.87	1.68	6422	858	4	0	3	0	0	logfile
✔	9N5V	49040	2025-06-11	2025-02-04	2.76	2.50	2.97	1.4	0.014	1.09	0.0	0.04	12.02	0.00	2.215	6.33	4.24	3.9	96.1	0.0	-0.64	0.91	0.84	3.65	1.3	0.004	1.19	0.0	0.05	14.95	0.01	2.447	10.38	2.01	4.7	95.3	0.0	-0.44	0.61	0.93	0.88	3.02	12711	1601	5	0	14	0	0	logfile
✔	9LSJ	63357	2025-06-13	2025-02-04	3.1	4.05	3.34	3.7	0.006	0.81	0.0	0.05	15.93	0.00	2.205	10.55	0.12	4.9	95.1	0.0	-0.69	0.80	0.83	3.29	3.7	0.003	0.61	0.0	0.04	14.90	0.00	2.498	9.23	0.78	4.0	96.0	0.0	0.10	1.11	0.80	0.84	2.62	15438	1989	11	0	15	0	0	logfile

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