Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CY4	46006	2025-06-05	2024-08-01	3.41	3.58	3.45	3.6	0.006	1.21	5.0	0.09	15.13	0.01	2.310	3.97	0.00	3.9	96.1	0.0	-3.09	0.58	0.73	1.85	3.6	0.004	0.76	1.0	0.05	16.57	0.01	2.570	11.72	3.28	5.6	94.4	0.0	0.69	1.26	0.62	0.79	1.03	5183	672	3	0	1	0	0	logfile
✔	9iZX	61045	2025-06-12	2024-08-01	3.0	4.21	3.05	3.5	0.002	0.51	0.0	0.04	8.95	0.00	1.332	4.11	0.46	2.3	97.6	0.1	-0.23	0.85	0.69	1.91	3.5	0.004	0.83	0.0	0.05	13.73	0.00	2.561	11.83	2.23	3.6	96.2	0.1	0.98	2.61	0.90	0.86	1.92	14152	1857	4	0	0	0	0	logfile
✔	9GC3	51228	2025-06-13	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.003	0.56	0.0	0.04	18.22	0.00	2.525	3.54	0.79	1.6	98.4	0.0	0.84	1.01	0.88	0.90	4.16	15046	1673	5	80	0	0	0	logfile
✔	9iZV	61043	2025-06-12	2024-08-01	3.02	4.37	3.10	3.6	0.002	0.48	0.0	0.04	8.21	0.00	1.991	5.46	0.20	2.0	98.0	0.0	-0.72	0.81	0.62	1.19	3.7	0.004	0.78	0.0	0.05	13.98	0.00	2.520	12.43	2.96	4.4	95.6	0.0	0.40	1.22	0.90	0.82	1.03	14118	1857	4	0	0	0	0	logfile
✘	9CXB	45984	2025-06-12	2024-07-31	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14479	1749	16	0	22	0	0	logfile
✔	9CX9	45982	2025-06-05	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.003	0.64	0.0	0.04	16.33	0.00	2.496	5.83	6.50	3.4	96.6	0.0	-0.72	0.48	0.80	0.80	2.17	4631	609	5	0	0	0	0	logfile
✔	9iZ0	61006	2025-06-28	2024-07-31	3.63	3.94	3.73	3.8	0.004	0.73	1.0	0.04	17.04	0.00	2.148	13.83	1.29	5.9	93.8	0.2	0.48	0.70	0.62	0.81	3.8	0.010	0.76	0.0	0.04	16.75	0.00	2.425	11.38	4.06	6.0	93.9	0.1	0.48	1.13	0.71	0.63	0.54	32048	4862	5	0	2	0	0	logfile
✔	9iYX	61003	2025-06-04	2024-07-31	3.6	3.14	2.42	3.2	0.005	0.79	1.0	0.04	12.81	0.01	2.132	11.46	0.40	2.7	97.3	0.0	1.26	0.44	0.67	2.43	3.2	0.004	0.68	0.0	0.04	14.63	0.01	2.589	5.93	3.16	2.4	97.6	0.0	3.12	1.64	0.45	0.69	2.22	2626	351	4	0	2	0	0	logfile
✔	9iZ7	61024	2025-06-11	2024-07-31	4.32	4.34	4.12	4.1	0.015	0.92	1.0	0.04	6.95	0.01	2.100	8.30	0.00	8.7	90.6	0.7	-0.91	0.55	0.54	—	4.1	0.006	1.03	0.0	0.05	8.25	0.01	2.350	4.37	0.00	16.1	83.6	0.3	-2.55	2.01	0.58	0.68	—	12996	2611	1	0	0	0	0	logfile
✔	9CXJ	45993	2025-06-09	2024-07-31	3.1	3.43	3.22	3.5	0.006	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.61	0.0	0.04	16.55	0.00	1.998	9.14	2.04	3.2	96.8	0.0	1.56	1.22	0.65	0.75	2.01	10227	1237	6	0	4	0	0	logfile
✔	9CXF	45988	2025-06-04	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.799	6.03	0.00	0.0	0.0	0.0	—	0.37	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✘	9GBV	51222	2025-06-27	2024-07-31	2.32	3.81	—	1.7	0.002	0.44	0.0	0.04	18.69	0.00	2.243	3.96	0.18	2.6	97.4	0.0	0.74	0.92	0.84	3.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31890	3236	8	318	2	0	0	logfile
✔	9CX3	45977	2025-06-05	2024-07-30	3.47	3.60	3.42	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.70	0.0	0.04	16.80	0.00	2.501	12.48	5.58	5.4	94.6	0.0	-1.74	0.54	0.74	0.71	1.79	5626	720	6	0	0	0	0	logfile
✘	9iY8	60990	2025-06-07	2024-07-30	3.01	2.61	3.04	3.1	0.003	0.79	0.0	0.05	16.61	0.01	2.102	16.87	0.30	4.4	95.6	0.0	0.01	0.82	0.83	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9014	1141	5	0	0	0	0	logfile
✔	9iXM	60973	2025-06-18	2024-07-29	3.26	3.36	—	3.2	0.004	0.95	14.0	0.06	20.10	0.01	1.655	16.20	1.97	4.6	94.7	0.7	-0.47	0.86	0.82	1.88	3.2	0.004	0.59	0.0	0.04	19.98	0.00	2.005	7.92	2.26	4.2	95.5	0.3	0.60	0.52	0.88	0.86	2.43	20925	2403	7	75	1	0	0	logfile
✔	9CVC	45959	2025-06-11	2024-07-29	3.5	3.85	3.64	3.7	0.004	0.69	0.0	0.04	14.29	0.01	2.041	14.29	0.00	7.4	92.3	0.3	-0.15	0.70	0.69	1.41	3.7	0.003	0.70	0.0	0.04	16.46	0.00	2.495	8.84	1.30	5.3	94.7	0.0	0.72	0.64	0.71	0.73	1.26	12564	1572	5	0	0	0	0	logfile
✔	9iXX	60980	2025-06-07	2024-07-29	3.15	3.09	2.95	3.2	0.008	0.65	0.0	0.04	9.06	0.00	1.977	7.09	0.30	1.6	98.4	0.0	-1.89	0.41	0.57	1.04	3.2	0.003	0.60	0.0	0.04	13.94	0.00	2.444	6.37	2.54	3.4	96.6	0.0	0.24	0.96	0.58	0.80	2.47	9036	1141	6	0	1	0	0	logfile
✔	9CV6	45956	2025-06-11	2024-07-28	3.12	3.70	3.15	3.6	0.004	0.85	0.0	0.06	11.33	0.01	2.314	3.62	0.00	2.3	97.7	0.0	-1.51	0.87	0.87	4.36	3.5	0.003	0.57	0.0	0.04	13.61	0.00	2.507	4.62	0.40	2.9	97.1	0.0	1.05	1.12	0.84	0.89	3.04	12030	1520	2	0	0	0	0	logfile
✔	9CV7	45957	2025-06-13	2024-07-28	3.8	4.16	3.75	3.8	0.006	1.18	0.0	0.06	16.81	0.01	2.141	5.77	0.42	5.0	95.0	0.0	-1.36	0.76	0.71	0.85	3.8	0.004	0.83	0.0	0.05	17.33	0.00	2.409	15.64	4.34	4.6	95.4	0.0	-0.72	1.56	0.77	0.74	1.22	15291	1863	12	0	42	0	0	logfile
✔	9CUH	45933	2025-06-18	2024-07-26	3.03	3.20	3.01	3.2	0.014	1.53	0.0	0.06	17.81	0.01	2.295	4.45	1.16	6.3	93.5	0.2	-5.89	0.68	0.83	4.17	3.2	0.002	0.62	0.0	0.04	15.98	0.00	2.444	5.76	1.31	4.1	95.9	0.0	0.74	0.61	0.72	0.86	2.49	20877	2376	12	0	49	72	0	logfile

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