Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CUJ	45935	2025-06-18	2024-07-26	2.78	2.95	2.81	3.0	0.011	1.39	0.0	0.05	17.60	0.01	2.291	5.23	1.51	4.3	95.7	0.0	-5.66	0.60	0.82	4.84	3.0	0.002	0.60	0.0	0.04	16.99	0.00	2.356	6.55	1.51	3.0	97.0	0.0	1.00	0.56	0.62	0.85	3.45	21557	2440	12	0	65	72	0	logfile
✔	9GA5	51174	2025-06-12	2024-07-26	3.2	4.30	3.30	3.6	0.004	0.84	1.0	0.05	20.06	0.00	1.844	17.70	0.23	5.6	94.4	0.0	-0.04	0.91	0.86	1.31	3.6	0.004	0.76	0.0	0.04	20.72	0.00	2.452	11.97	2.15	5.9	94.1	0.0	0.02	0.36	0.91	0.87	1.05	13715	1594	6	71	6	0	0	logfile
✔	9GA3	51170	2025-06-16	2024-07-26	4.3	8.47	4.38	4.2	0.004	0.72	0.0	0.04	19.76	0.01	2.224	15.69	1.97	8.4	91.6	0.0	-1.90	0.90	0.78	—	4.3	0.004	0.74	0.0	0.04	18.61	0.01	2.405	25.44	0.00	7.4	92.6	0.0	-1.09	1.18	0.90	0.78	—	18691	2207	7	79	7	0	0	logfile
✔	9CUH	45933	2025-06-18	2024-07-26	3.03	3.20	3.01	3.2	0.014	1.53	0.0	0.06	17.81	0.01	2.295	4.45	1.16	6.3	93.5	0.2	-5.89	0.68	0.83	4.17	3.2	0.002	0.62	0.0	0.04	15.98	0.00	2.444	5.76	1.31	4.1	95.9	0.0	0.74	0.61	0.72	0.86	2.49	20877	2376	12	0	49	72	0	logfile
✔	9GA2	51169	2025-06-09	2024-07-26	4.9	9.45	6.14	8.0	0.003	0.75	0.0	0.05	14.55	0.00	2.525	15.89	1.64	4.8	95.2	0.0	-0.08	0.89	0.77	—	8.1	0.002	0.61	0.0	0.04	13.24	0.00	2.414	17.40	0.09	4.8	95.2	0.0	0.05	1.07	0.91	0.80	—	10239	1343	4	0	3	0	0	logfile
✔	9GA4	51173	2025-06-21	2024-07-26	3.7	4.90	—	3.6	0.007	0.91	0.0	0.04	19.30	0.01	2.261	19.55	0.16	6.0	94.0	0.0	-1.38	0.77	0.52	0.31	3.6	0.003	0.80	0.0	0.05	19.87	0.01	2.336	25.39	4.10	7.7	92.2	0.1	-1.94	1.06	0.79	0.58	0.16	24900	3005	8	74	4	0	0	logfile
✔	9CUi	45934	2025-06-19	2024-07-26	3.42	3.67	3.48	3.7	0.011	1.43	1.0	0.06	15.90	0.01	2.183	5.04	0.39	11.3	88.2	0.5	-6.40	0.71	0.79	2.59	3.7	0.003	0.74	0.0	0.04	16.08	0.00	1.859	7.94	1.57	10.9	89.1	0.0	-1.23	0.74	0.72	0.82	1.81	22713	2650	10	0	62	0	0	logfile
✔	9iX4	60964	2025-06-17	2024-07-26	2.96	3.46	2.99	3.3	0.006	0.73	1.0	0.05	17.46	0.00	2.214	11.95	1.02	5.4	94.2	0.4	-0.28	0.81	0.83	2.95	3.3	0.003	0.63	0.0	0.04	18.38	0.00	2.393	7.97	1.02	3.8	96.2	0.0	0.65	1.42	0.80	0.84	2.62	19997	2348	8	45	2	0	0	logfile
✔	9CU4	45927	2025-06-13	2024-07-25	3.3	3.96	3.35	3.8	0.013	1.85	3.0	0.10	13.50	0.03	1.559	5.78	0.76	4.1	95.9	0.0	-1.06	0.85	0.85	3.79	3.8	0.003	0.64	0.0	0.05	13.40	0.00	2.490	2.84	0.63	2.2	97.8	0.0	-0.25	1.04	0.81	0.84	3.07	14688	1755	12	0	54	0	0	logfile
✘	9CTR	45916	2025-06-14	2024-07-25	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15623	1880	10	0	9	0	0	logfile
✔	9CTM	45911	2025-06-22	2024-07-25	2.92	3.28	3.04	3.3	0.003	0.55	0.0	0.05	17.01	0.00	2.078	7.16	0.42	3.5	96.5	0.0	0.33	0.62	0.74	1.99	3.2	0.003	0.61	0.0	0.06	17.12	0.00	2.241	4.84	1.88	4.7	95.3	0.0	0.16	0.67	0.65	0.82	3.55	26266	1724	2	0	0	0	13032	logfile
✔	9iW3	60944	2025-06-05	2024-07-25	3.58	4.09	3.62	3.8	0.005	0.91	2.0	0.06	23.44	0.00	1.930	22.54	2.34	6.8	92.8	0.4	-0.43	0.83	0.77	2.86	3.9	0.003	0.65	0.0	0.04	23.29	0.00	1.957	9.51	1.09	5.9	93.7	0.4	0.46	1.13	0.84	0.83	2.78	6879	712	5	51	1	0	0	logfile
✔	9CTG	45906	2025-06-08	2024-07-25	3.4	3.21	3.42	3.5	0.004	0.60	0.0	0.04	16.15	0.00	1.927	7.52	0.11	3.0	97.0	0.0	0.52	0.62	0.80	1.92	3.5	0.005	0.90	0.0	0.04	17.32	0.00	1.627	7.68	2.54	3.6	96.4	0.0	0.87	0.49	0.64	0.82	2.00	9128	1157	2	0	13	0	0	logfile
✘	9CTS	45917	2025-06-14	2024-07-25	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15623	1880	10	0	9	0	0	logfile
✔	9CU5	45928	2025-06-20	2024-07-25	3.4	3.88	3.48	3.8	0.008	1.13	0.0	0.06	14.73	0.01	1.903	4.16	0.12	6.5	93.5	0.0	-1.07	0.66	0.78	2.24	3.8	0.006	0.98	2.0	0.05	14.86	0.01	2.272	11.32	3.04	4.9	95.1	0.0	-0.51	0.50	0.68	0.80	2.49	23538	2860	26	0	78	0	0	logfile
✘	9CU6	45929	2025-06-20	2024-07-25	3.3	3.72	3.36	3.7	0.007	1.19	0.0	0.07	14.82	0.01	2.144	3.14	0.20	4.2	95.8	0.0	0.59	0.67	0.82	3.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23631	2874	28	0	77	0	0	logfile
✔	9G9X	51160	2025-06-04	2024-07-25	3.13	3.60	3.08	3.5	0.007	0.75	0.0	0.05	11.30	0.01	2.404	1.01	0.00	0.8	99.2	0.0	-1.06	0.49	0.78	4.25	3.5	0.003	0.51	0.0	0.04	13.14	0.00	2.598	1.77	1.03	2.9	97.1	0.0	4.28	0.94	0.46	0.75	2.58	3955	488	4	0	7	0	0	logfile
✔	9G9V	51158	2025-06-04	2024-07-25	3.32	3.86	3.31	3.7	0.007	0.75	0.0	0.05	11.17	0.00	2.245	1.73	0.53	1.5	98.5	0.0	-0.06	0.48	0.77	4.24	3.7	0.003	0.59	0.0	0.04	12.85	0.00	2.601	2.35	1.58	1.0	99.0	0.0	4.08	1.01	0.50	0.78	3.08	4073	522	4	0	9	0	0	logfile
✘	9CTQ	45915	2025-06-13	2024-07-25	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15630	1880	10	0	10	0	0	logfile
✔	9CTJ	45908	2025-06-12	2024-07-25	3.74	4.08	3.88	4.1	0.007	1.09	0.0	0.07	15.10	0.02	2.091	8.09	1.84	5.9	94.1	0.0	-2.75	0.63	0.75	2.49	4.1	0.004	0.77	0.0	0.05	15.72	0.00	2.520	10.91	2.99	3.7	96.3	0.0	-0.24	1.35	0.66	0.80	2.19	14465	1755	14	0	18	0	0	logfile

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