Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iUZ	60916	2025-06-06	2024-07-22	3.19	3.81	3.33	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.60	0.0	0.04	18.16	0.00	2.485	5.59	2.22	3.5	96.5	0.0	1.45	0.93	0.75	0.82	1.51	8349	1061	5	0	2	0	0	logfile
✔	9iV2	60918	2025-06-05	2024-07-22	3.53	4.14	3.44	3.9	0.002	0.54	0.0	0.04	17.47	0.00	2.186	8.42	0.00	5.1	94.9	0.0	-0.13	0.71	0.84	0.91	3.9	0.003	0.55	0.0	0.04	17.62	0.00	2.546	6.22	4.47	5.3	94.7	0.0	-0.27	0.26	0.71	0.84	0.87	6732	892	5	0	1	0	0	logfile
✔	9iV1	60917	2025-06-06	2024-07-22	2.98	2.31	3.06	2.1	0.007	0.89	1.0	0.05	16.44	0.00	2.181	13.35	4.62	7.5	91.7	0.8	-1.29	0.79	0.80	2.60	2.1	0.004	0.72	0.0	0.04	16.35	0.00	2.484	8.59	4.38	7.9	92.0	0.1	-0.78	0.37	0.79	0.80	2.36	8284	1109	6	0	1	0	0	logfile
✔	9CR8	45854	2025-06-07	2024-07-21	3.8	3.66	3.65	3.7	0.003	0.49	0.0	0.04	12.79	0.00	2.219	7.50	0.22	6.6	93.4	0.0	0.48	0.63	0.77	1.73	3.7	0.003	0.56	0.0	0.04	15.27	0.00	2.515	6.71	3.25	6.3	93.7	0.0	1.12	0.47	0.66	0.77	1.42	8664	1087	2	0	15	0	0	logfile
✔	9CRA	45856	2025-06-08	2024-07-21	2.34	2.18	2.35	2.0	0.003	0.60	0.0	0.05	12.61	0.01	2.203	10.41	0.00	7.6	92.4	0.0	-0.84	0.82	0.82	3.02	2.0	0.003	0.61	0.0	0.05	15.40	0.01	2.506	7.06	2.48	7.1	92.9	0.0	-0.51	0.38	0.83	0.83	2.23	9842	1247	8	0	4	0	0	logfile
✔	9iTM	60871	2025-06-09	2024-07-20	3.16	3.77	3.25	3.7	0.011	0.65	0.0	0.04	16.32	0.01	2.239	11.88	0.28	4.3	95.7	0.0	0.18	0.64	0.81	0.89	3.7	0.004	0.67	0.0	0.04	17.04	0.01	2.490	12.61	5.07	4.3	95.7	0.0	1.76	0.40	0.63	0.80	0.62	10692	1424	16	0	0	0	0	logfile
✔	9iTZ	60884	2025-06-06	2024-07-20	4.28	6.32	4.43	6.5	0.006	0.83	0.0	0.06	10.76	0.00	2.204	14.67	0.21	5.4	94.5	0.1	0.17	0.59	0.71	—	6.5	0.004	0.73	0.0	0.05	10.34	0.00	2.356	17.32	0.00	5.6	94.3	0.1	0.97	0.73	0.59	0.69	—	8039	1320	16	0	0	0	0	logfile
✔	9G79	51116	2025-06-06	2024-07-20	2.89	3.21	2.90	3.1	0.003	0.59	0.0	0.04	15.64	0.01	2.243	9.18	0.00	2.9	97.1	0.0	0.63	0.78	0.86	4.04	3.1	0.003	0.57	0.0	0.04	16.24	0.00	2.497	7.70	3.06	2.7	97.3	0.0	0.80	0.83	0.77	0.86	3.26	7232	898	2	0	0	0	0	logfile
✔	9iTR	60876	2025-06-11	2024-07-20	4.6	7.03	4.69	6.5	0.005	0.75	0.0	0.05	13.78	0.00	2.223	15.36	0.00	4.7	95.3	0.0	-0.27	0.68	0.74	—	6.5	0.004	0.75	0.0	0.05	13.26	0.00	2.309	21.83	0.00	4.0	96.0	0.0	0.32	1.07	0.68	0.75	—	13036	1818	16	0	0	0	0	logfile
✔	9G7F	51121	2025-06-08	2024-07-20	2.93	3.38	3.05	3.3	0.004	0.74	0.0	0.05	17.49	0.00	2.211	18.43	0.80	3.6	96.4	0.0	-0.38	0.74	0.75	1.43	3.3	0.003	0.71	0.0	0.05	18.06	0.00	2.568	15.06	3.98	3.4	96.6	0.0	-0.01	0.86	0.73	0.74	1.33	9647	1198	3	0	0	0	0	logfile
✔	9CR4	45832	2025-06-08	2024-07-20	2.81	2.35	2.85	2.1	0.003	0.56	0.0	0.05	9.52	0.00	2.190	7.48	0.00	7.7	92.3	0.0	-0.39	0.75	0.75	2.65	2.2	0.003	0.66	0.0	0.05	14.44	0.01	2.321	9.83	3.11	7.5	92.5	0.0	0.10	0.56	0.75	0.75	2.18	9099	1179	4	0	0	0	0	logfile
✔	9CR3	45831	2025-06-08	2024-07-20	3.18	2.56	3.18	2.2	0.003	0.62	0.0	0.05	11.75	0.00	2.045	10.49	0.00	6.0	94.0	0.0	-0.53	0.76	0.81	2.93	2.2	0.003	0.66	0.0	0.05	15.35	0.00	2.499	10.54	2.95	10.7	89.3	0.0	-0.26	0.94	0.76	0.81	2.54	9299	1200	4	0	0	0	0	logfile
✔	9iTX	60882	2025-06-07	2024-07-20	4.1	5.56	4.24	4.6	0.003	0.55	0.0	0.04	11.86	0.00	2.245	9.77	0.00	3.8	96.2	0.0	2.91	0.59	0.70	—	4.6	0.005	0.70	0.0	0.05	12.01	0.01	2.361	18.62	0.00	4.7	95.3	0.0	1.59	0.92	0.61	0.72	—	9081	1368	16	0	0	0	0	logfile
✔	9iU1	60886	2025-06-09	2024-07-20	4.3	4.47	4.34	4.4	0.003	0.62	0.0	0.04	17.14	0.00	2.241	9.47	0.00	8.5	91.5	0.0	0.02	0.64	0.68	—	4.4	0.003	0.67	0.0	0.04	14.77	0.00	2.424	8.62	0.00	8.3	91.7	0.0	-0.37	0.68	0.65	0.69	—	6603	790	8	0	14	0	0	logfile
✔	9iTV	60880	2025-06-09	2024-07-20	3.97	4.53	3.85	4.1	0.004	0.74	0.0	0.04	15.89	0.00	2.277	12.07	0.10	3.7	96.3	0.0	2.12	0.61	0.72	-0.05	4.1	0.004	0.97	0.0	0.05	16.65	0.01	2.488	24.89	2.77	3.8	96.2	0.0	0.26	1.32	0.63	0.73	-0.30	10419	1424	16	0	0	0	0	logfile
✔	9iTQ	60875	2025-06-08	2024-07-20	3.98	4.54	3.95	4.2	0.010	0.66	0.0	0.04	15.13	0.00	2.128	12.34	0.50	4.5	95.5	0.0	0.87	0.58	0.75	0.43	4.2	0.005	0.91	0.0	0.05	16.24	0.00	2.487	25.22	5.95	4.7	95.3	0.0	0.58	0.73	0.59	0.77	-0.30	9411	1361	16	0	0	0	0	logfile
✔	9iUC	60897	2025-06-09	2024-07-20	3.8	4.02	3.81	4.1	0.003	0.76	0.0	0.35	21.29	0.00	2.247	11.91	0.10	3.3	96.7	0.0	-0.05	0.55	0.78	1.19	4.1	0.003	0.67	0.0	0.04	18.21	0.00	2.497	9.78	1.38	3.0	97.0	0.0	0.74	0.55	0.58	0.77	1.07	10360	1140	4	0	26	0	0	logfile
✔	9iTY	60883	2025-06-09	2024-07-20	4.95	7.92	5.93	6.7	0.002	0.48	0.0	0.04	10.21	0.00	2.223	11.36	0.00	4.3	95.7	0.0	1.81	0.66	0.44	—	6.5	0.005	0.67	0.0	0.04	10.04	0.01	2.431	22.57	0.00	6.2	93.8	0.0	1.46	0.70	0.68	0.57	—	10477	1807	16	0	0	0	0	logfile
✔	9iTW	60881	2025-06-11	2024-07-20	4.08	4.79	4.08	4.2	0.010	0.69	0.0	0.05	13.28	0.01	2.321	7.94	0.00	3.6	96.4	0.0	1.37	0.68	0.73	—	4.2	0.004	0.70	0.0	0.04	13.14	0.00	2.339	15.41	0.00	3.9	96.1	0.0	1.47	0.92	0.69	0.74	—	12998	1866	16	0	0	0	0	logfile
✔	9iTN	60872	2025-06-12	2024-07-20	3.48	4.09	3.57	3.8	0.011	0.91	0.0	0.05	18.09	0.01	2.213	13.97	0.78	4.7	95.3	0.1	-0.27	0.69	0.79	0.29	3.8	0.003	0.71	0.0	0.04	18.40	0.01	2.500	14.60	5.32	4.2	95.8	0.0	1.22	0.39	0.69	0.79	-0.04	14103	1858	16	0	0	0	0	logfile

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