Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iTN	60872	2025-06-12	2024-07-20	3.48	4.09	3.57	3.8	0.011	0.91	0.0	0.05	18.09	0.01	2.213	13.97	0.78	4.7	95.3	0.1	-0.27	0.69	0.79	0.29	3.8	0.003	0.71	0.0	0.04	18.40	0.01	2.500	14.60	5.32	4.2	95.8	0.0	1.22	0.39	0.69	0.79	-0.04	14103	1858	16	0	0	0	0	logfile
✔	9iU1	60886	2025-06-09	2024-07-20	4.3	4.47	4.34	4.4	0.003	0.62	0.0	0.04	17.14	0.00	2.241	9.47	0.00	8.5	91.5	0.0	0.02	0.64	0.68	—	4.4	0.003	0.67	0.0	0.04	14.77	0.00	2.424	8.62	0.00	8.3	91.7	0.0	-0.37	0.68	0.65	0.69	—	6603	790	8	0	14	0	0	logfile
✔	9CQM	45815	2025-06-05	2024-07-19	2.55	2.72	2.55	2.8	0.009	0.70	0.0	0.04	17.70	0.01	2.149	5.83	1.32	0.7	99.3	0.0	3.59	0.74	0.86	3.17	2.7	0.005	0.72	0.0	0.04	17.36	0.01	2.600	5.05	3.08	0.9	99.1	0.0	3.93	0.89	0.68	0.84	2.66	4790	568	12	0	8	290	0	logfile
✔	9CQo	45817	2025-06-04	2024-07-19	3.01	3.27	3.01	3.3	0.007	0.84	0.0	0.05	15.65	0.01	2.218	5.63	2.86	1.1	98.9	0.0	3.00	0.69	0.84	3.03	3.3	0.004	0.58	0.0	0.04	15.48	0.01	2.533	3.04	2.86	1.4	98.6	0.0	3.16	0.81	0.68	0.83	3.31	4470	566	8	0	4	0	0	logfile
✔	9CQQ	45819	2025-06-04	2024-07-19	2.91	3.14	2.88	3.2	0.005	0.69	1.0	0.05	15.96	0.01	2.175	5.29	1.76	1.4	98.6	0.0	3.28	0.69	0.85	3.22	3.2	0.005	0.60	0.0	0.04	16.20	0.01	2.574	3.71	1.76	0.9	99.1	0.0	2.80	0.78	0.70	0.86	3.40	4470	566	8	0	4	0	0	logfile
✔	9CQ1	45806	2025-06-11	2024-07-19	4.3	4.57	4.31	4.3	0.012	1.49	0.0	0.08	10.94	0.01	1.910	4.48	0.43	1.8	98.1	0.1	-0.12	0.71	0.54	—	4.3	0.005	0.79	0.0	0.05	12.37	0.01	2.323	20.61	0.00	4.2	95.8	0.0	0.45	1.29	0.78	0.76	—	12940	1694	2	0	0	0	0	logfile
✔	9CQW	45825	2025-06-04	2024-07-19	2.61	2.85	2.62	2.9	0.006	0.87	0.0	0.06	17.31	0.01	2.158	5.85	5.51	0.5	99.5	0.0	2.83	0.68	0.85	2.82	2.9	0.004	0.61	0.0	0.04	17.46	0.01	2.569	4.84	2.86	0.5	99.5	0.0	3.11	0.25	0.70	0.86	2.57	4470	566	8	0	4	0	0	logfile
✔	9CQV	45824	2025-06-04	2024-07-19	2.75	3.01	2.78	3.1	0.006	0.79	0.0	0.05	16.70	0.01	2.206	5.29	3.08	0.5	99.5	0.0	2.90	0.69	0.85	3.44	3.0	0.004	0.62	0.0	0.04	16.44	0.01	2.571	4.50	2.64	0.9	99.1	0.0	3.02	0.33	0.70	0.86	3.48	4470	566	8	0	4	0	0	logfile
✔	9CQN	45816	2025-06-05	2024-07-19	2.37	2.55	2.38	2.6	0.009	0.70	0.0	0.04	17.70	0.01	2.149	5.83	1.32	0.7	99.3	0.0	3.59	0.73	0.85	3.28	2.6	0.003	0.71	0.0	0.04	17.79	0.01	2.582	5.27	1.32	0.0	100.0	0.0	3.83	0.35	0.66	0.81	2.99	4790	568	12	0	8	290	0	logfile
✔	9CQ7	45810	2025-06-05	2024-07-19	3.21	3.47	3.19	3.5	0.003	0.62	0.0	0.05	14.05	0.00	2.131	12.25	0.00	5.8	94.2	0.0	-0.70	0.68	0.74	2.52	3.4	0.003	0.67	0.0	0.05	16.19	0.00	2.480	9.45	4.16	5.4	94.6	0.0	-1.08	1.01	0.67	0.77	2.45	5222	660	7	0	4	0	0	logfile
✔	9CQT	45822	2025-06-05	2024-07-19	2.37	2.53	2.37	2.6	0.014	0.68	0.0	0.04	18.27	0.01	2.090	7.18	0.44	0.5	99.5	0.0	3.48	0.69	0.84	2.89	2.7	0.005	0.80	0.0	0.04	18.19	0.01	2.595	3.36	0.66	0.7	99.3	0.0	3.68	0.77	0.69	0.84	3.22	4790	568	12	0	8	290	0	logfile
✔	9CQS	45821	2025-06-05	2024-07-19	2.52	2.71	2.55	2.8	0.013	0.71	0.0	0.05	17.31	0.01	2.103	6.73	0.88	0.5	99.5	0.0	3.54	0.69	0.84	3.58	2.8	0.003	0.74	0.0	0.04	17.35	0.01	2.620	4.26	1.98	0.5	99.5	0.0	4.02	0.81	0.68	0.84	3.13	4790	568	12	0	8	290	0	logfile
✔	9CQR	45820	2025-06-04	2024-07-19	2.7	2.92	2.70	3.0	0.006	0.84	0.0	0.05	16.04	0.01	2.258	5.29	2.64	1.4	98.6	0.0	3.05	0.66	0.83	4.35	3.0	0.004	0.62	0.0	0.04	16.65	0.01	2.608	4.50	2.20	1.6	98.4	0.0	2.53	0.26	0.67	0.84	4.21	4470	566	8	0	4	0	0	logfile
✔	9CQP	45818	2025-06-04	2024-07-19	2.78	3.06	2.79	3.1	0.006	0.87	0.0	0.05	15.27	0.01	2.236	6.98	2.86	0.7	99.3	0.0	2.75	0.66	0.82	3.63	3.1	0.005	0.63	0.0	0.04	15.82	0.01	2.508	5.63	1.32	0.9	99.1	0.0	2.47	0.83	0.67	0.83	3.32	4470	566	8	0	4	0	0	logfile
✔	9G6V	51105	2025-06-18	2024-07-19	2.9	3.36	3.12	3.3	0.003	0.44	0.0	0.04	8.59	0.00	2.254	5.44	0.68	4.7	95.3	0.0	-0.91	0.73	0.81	3.64	3.3	0.003	0.55	0.0	0.04	13.78	0.00	2.284	6.24	1.78	5.2	94.8	0.0	-1.36	0.58	0.67	0.78	3.13	21815	2760	20	0	0	0	0	logfile
✔	9CQU	45823	2025-06-05	2024-07-19	2.72	2.91	2.72	3.0	0.011	0.82	2.0	0.05	17.92	0.01	2.230	6.17	1.76	0.5	99.5	0.0	3.57	0.70	0.84	3.56	3.0	0.006	0.69	0.0	0.04	17.71	0.01	2.484	4.94	2.42	1.1	98.9	0.0	3.85	0.35	0.69	0.84	3.42	4707	568	12	0	6	211	0	logfile
✔	9iSN	60839	2025-06-20	2024-07-18	2.97	3.17	2.98	3.2	0.004	0.74	0.0	0.04	16.81	0.01	2.198	5.71	0.65	5.2	94.8	0.0	-1.09	0.67	0.73	2.22	3.2	0.004	0.67	0.0	0.04	18.28	0.00	1.957	8.96	2.31	4.5	95.5	0.0	-0.31	0.44	0.67	0.74	1.78	24219	2931	8	68	3	0	0	logfile
✔	9G69	51096	2025-06-05	2024-07-18	4.84	4.50	4.72	4.9	0.002	0.62	0.0	0.05	8.65	0.00	2.386	2.80	0.00	7.6	92.3	0.1	-2.18	0.69	0.70	—	4.8	0.006	0.98	0.0	0.05	9.65	0.00	2.378	8.27	0.00	23.5	76.3	0.2	-4.33	0.53	0.72	0.74	—	5053	1028	5	0	1	0	0	logfile
✔	9iSV	60850	2025-06-06	2024-07-18	3.07	3.27	3.12	3.2	0.002	0.64	0.0	0.04	25.32	0.00	2.229	0.97	0.00	0.0	0.0	0.0	—	0.63	0.55	—	3.2	0.007	0.90	0.0	0.05	25.27	0.01	1.802	13.88	0.00	0.0	0.0	0.0	—	0.79	0.65	0.59	—	7537	0	1	351	0	0	0	logfile
✔	9CPo	45805	2025-06-20	2024-07-18	3.5	3.83	3.56	3.9	0.003	0.49	0.0	0.04	15.92	0.00	2.159	4.11	0.00	4.7	95.3	0.0	0.08	0.66	0.77	2.63	3.9	0.002	0.47	0.0	0.04	15.99	0.00	2.397	3.16	1.79	3.7	96.3	0.0	0.34	0.25	0.67	0.78	2.08	24089	1392	7	63	2	0	11624	logfile

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