Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9G5i	51087	2025-06-05	2024-07-17	3.2	3.11	3.08	3.7	0.010	1.03	0.0	0.07	13.94	0.01	2.262	9.85	0.00	4.7	95.3	0.0	-1.90	0.71	0.76	2.10	3.7	0.003	0.61	0.0	0.05	15.53	0.00	2.453	10.44	2.85	5.0	95.0	0.0	-1.13	1.22	0.72	0.76	1.94	5252	732	3	0	0	0	0	logfile
✔	9CP5	45800	2025-06-06	2024-07-17	3.51	3.94	3.57	3.9	0.003	0.73	0.0	0.05	14.36	0.00	2.238	5.44	0.00	6.2	93.8	0.0	-1.74	0.63	0.74	1.80	3.9	0.004	0.71	0.0	0.04	16.56	0.00	2.539	11.14	2.60	6.3	93.7	0.0	-0.19	1.55	0.66	0.77	1.68	7450	966	4	0	1	0	0	logfile
✔	9iS7	60833	2025-06-12	2024-07-17	2.87	3.10	3.00	3.0	0.003	0.61	0.0	0.05	25.49	0.00	2.059	1.40	0.00	0.0	0.0	0.0	—	0.78	0.77	—	3.0	0.007	0.75	0.0	0.04	25.33	0.01	1.842	5.03	0.00	0.0	0.0	0.0	—	1.15	0.83	0.84	—	15216	0	4	705	33	0	0	logfile
✔	9iS8	60834	2025-06-13	2024-07-17	2.77	2.94	2.78	3.1	0.010	0.99	9.0	0.06	18.28	0.01	2.190	15.06	10.09	9.2	90.7	0.1	-3.96	0.49	0.71	2.10	3.0	0.003	0.63	0.0	0.04	17.76	0.00	2.433	6.62	3.89	5.0	95.0	0.0	-0.16	1.26	0.63	0.82	2.20	14809	1796	8	0	7	0	0	logfile
✔	9iSi	60836	2025-06-04	2024-07-17	3.56	3.80	3.46	3.7	0.005	0.67	0.0	0.04	14.08	0.00	2.397	9.20	0.00	2.5	97.5	0.0	1.49	0.50	0.67	1.52	3.8	0.003	0.63	0.0	0.04	15.56	0.00	2.636	7.21	3.15	2.9	97.1	0.0	2.27	1.51	0.52	0.72	1.36	1955	252	1	0	0	0	0	logfile
✔	9G5K	51088	2025-06-04	2024-07-17	2.87	2.98	2.84	2.9	0.004	0.62	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.65	0.0	0.04	16.46	0.00	2.501	5.21	2.82	2.8	97.2	0.0	2.14	0.90	0.64	0.84	2.76	4040	507	3	0	1	0	0	logfile
✔	9Coo	45787	2025-06-06	2024-07-17	3.73	4.04	3.70	3.9	0.003	0.68	0.0	0.04	16.58	0.00	2.182	15.37	1.45	6.8	93.2	0.0	-2.63	0.79	0.75	0.77	3.9	0.005	0.76	0.0	0.04	17.00	0.00	2.221	12.86	6.21	9.3	90.7	0.0	-2.23	2.38	0.79	0.76	0.65	7493	1028	8	0	6	0	0	logfile
✔	9CoD	45776	2025-06-11	2024-07-16	4.7	4.64	4.83	4.3	0.004	1.08	0.0	0.04	13.74	0.00	2.175	20.80	0.00	24.3	71.8	3.9	-4.85	0.84	0.75	—	4.4	0.003	0.91	0.0	0.04	14.62	0.00	2.548	15.60	0.00	20.4	74.8	4.9	-4.35	0.71	0.84	0.77	—	12405	1575	15	0	0	0	0	logfile
✔	9iRW	60823	2025-06-04	2024-07-16	3.26	3.49	3.17	3.5	0.007	0.72	0.0	0.04	11.88	0.01	2.239	8.79	3.47	4.9	95.1	0.0	-0.95	0.58	0.79	2.21	3.5	0.004	0.69	0.0	0.04	14.35	0.00	2.494	8.92	3.72	4.9	95.1	0.0	-0.68	0.29	0.63	0.82	2.60	3808	499	2	0	1	0	0	logfile
✔	9Co7	45772	2025-06-05	2024-07-16	3.32	4.05	3.32	3.9	0.005	1.08	0.0	0.06	13.46	0.01	2.215	5.41	0.18	8.4	90.9	0.8	-2.76	0.74	0.82	2.87	3.8	0.004	0.84	0.0	0.05	15.66	0.01	2.262	10.72	2.14	9.0	90.6	0.5	-1.70	1.39	0.75	0.84	3.36	5220	666	4	0	0	0	0	logfile
✔	9Co9	45774	2025-06-05	2024-07-16	3.44	4.12	3.45	3.9	0.006	1.02	0.0	0.06	12.97	0.01	2.330	6.14	0.72	6.3	93.1	0.6	-2.36	0.77	0.78	3.28	3.9	0.004	0.79	0.0	0.05	15.64	0.00	2.398	8.51	2.86	4.7	94.9	0.3	-1.44	2.39	0.75	0.83	2.86	5198	661	4	0	0	0	0	logfile
✔	9Co6	45771	2025-06-24	2024-07-16	3.01	3.57	3.05	3.4	0.004	0.87	0.0	0.06	12.95	0.01	1.961	4.49	0.03	5.4	94.4	0.2	-1.26	0.81	0.81	2.45	3.4	0.003	0.62	0.0	0.04	14.02	0.00	2.467	5.30	0.98	4.4	95.5	0.1	-0.28	0.47	0.82	0.87	2.46	28149	3546	17	0	36	0	0	logfile
✔	9Co8	45773	2025-06-24	2024-07-16	2.99	3.57	3.08	3.4	0.005	1.00	0.0	0.06	12.63	0.01	2.231	4.13	0.03	6.2	93.6	0.1	-1.94	0.78	0.73	2.81	3.4	0.003	0.64	0.0	0.05	14.05	0.00	2.478	6.14	0.72	4.7	95.2	0.1	-0.60	1.02	0.79	0.85	2.53	29026	3657	22	0	32	0	0	logfile
✘	9iRX	60824	2025-06-04	2024-07-16	3.0	3.17	2.77	3.2	0.009	0.58	0.0	0.03	11.28	0.00	2.197	7.04	0.56	2.4	97.6	0.0	2.29	0.65	0.82	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3509	469	2	0	1	0	0	logfile
✔	9CMP	45752	2025-06-05	2024-07-15	3.3	3.63	3.24	3.4	0.004	0.77	0.0	0.05	14.58	0.00	2.141	1.52	0.46	3.9	96.1	0.0	-1.15	0.73	0.66	2.05	3.5	0.003	0.62	0.0	0.04	16.55	0.00	2.235	9.38	2.29	3.2	96.8	0.0	-0.39	1.57	0.76	0.71	1.67	6211	768	4	43	1	0	0	logfile
✔	9CNX	45765	2025-06-14	2024-07-15	3.55	3.57	3.52	3.4	0.008	0.70	0.0	0.05	12.67	0.01	2.310	1.93	0.00	2.3	97.7	0.0	0.18	0.78	0.83	3.10	3.4	0.004	0.60	0.0	0.04	14.65	0.00	2.456	3.21	0.65	2.3	97.7	0.0	0.85	0.41	0.80	0.85	3.06	11582	1481	7	0	3	0	0	logfile
✔	9CMi	45749	2025-06-06	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.003	0.89	0.0	0.04	15.72	0.00	2.287	8.77	2.20	3.4	96.6	0.0	-0.33	0.96	0.76	0.78	2.80	7877	1025	7	0	1	2	0	logfile
✘	9CMH	45748	2025-06-04	2024-07-15	4.0	4.53	4.01	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3553	466	2	0	0	0	0	logfile
✔	9CNZ	45767	2025-06-11	2024-07-15	3.1	3.13	3.12	3.1	0.004	0.68	0.0	0.05	13.57	0.01	2.259	3.52	0.00	2.2	97.8	0.0	0.43	0.76	0.83	3.46	3.1	0.003	0.55	0.0	0.04	15.41	0.00	2.482	5.78	2.12	1.9	98.1	0.0	0.99	1.26	0.75	0.85	2.73	12854	1638	11	0	6	0	0	logfile
✔	9CNS	45758	2025-06-15	2024-07-15	3.25	4.23	3.23	3.7	0.045	1.95	0.0	0.13	22.70	0.02	0.218	6.03	0.62	3.6	96.4	0.0	-2.84	0.48	0.54	-0.59	3.8	0.013	1.98	0.0	0.12	22.80	0.01	0.164	13.89	1.60	3.8	96.2	0.0	0.20	1.86	0.59	0.83	1.49	17826	2214	24	0	12	0	0	logfile

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