Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CNW	45764	2025-06-11	2024-07-15	2.6	2.60	2.57	2.5	0.003	0.58	0.0	0.04	12.85	0.00	2.133	1.84	0.00	1.8	98.2	0.0	1.26	0.78	0.84	4.36	2.5	0.003	0.61	0.0	0.04	16.23	0.00	2.520	3.45	1.28	2.2	97.8	0.0	1.48	0.42	0.81	0.87	3.81	11647	1493	5	0	0	0	0	logfile
✘	9CMH	45748	2025-06-04	2024-07-15	4.0	4.53	4.01	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3553	466	2	0	0	0	0	logfile
✔	9CNV	45761	2025-06-09	2024-07-15	3.16	4.25	2.90	3.9	0.038	1.88	0.0	0.13	20.73	0.03	0.189	5.53	0.00	4.4	95.6	0.0	-1.59	0.64	0.67	1.12	3.9	0.029	2.47	0.0	0.19	20.30	0.01	0.173	12.93	1.83	2.3	97.7	0.0	1.41	2.71	0.71	0.85	2.17	11388	1398	18	0	12	0	0	logfile
✔	9CMi	45749	2025-06-06	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.003	0.89	0.0	0.04	15.72	0.00	2.287	8.77	2.20	3.4	96.6	0.0	-0.33	0.96	0.76	0.78	2.80	7877	1025	7	0	1	2	0	logfile
✔	9CNS	45758	2025-06-15	2024-07-15	3.25	4.23	3.23	3.7	0.045	1.95	0.0	0.13	22.70	0.02	0.218	6.03	0.62	3.6	96.4	0.0	-2.84	0.48	0.54	-0.59	3.8	0.013	1.98	0.0	0.12	22.80	0.01	0.164	13.89	1.60	3.8	96.2	0.0	0.20	1.86	0.59	0.83	1.49	17826	2214	24	0	12	0	0	logfile
✔	9iR4	60800	2025-06-12	2024-07-14	3.01	2.32	3.17	2.1	0.002	0.54	0.0	0.04	13.20	0.00	2.127	6.25	0.00	2.7	97.2	0.1	1.06	0.76	0.77	2.60	2.1	0.005	0.61	0.0	0.04	16.15	0.00	1.966	6.33	1.93	3.3	96.6	0.1	1.78	0.93	0.78	0.81	2.74	12604	1584	7	0	2	0	0	logfile
✔	9CMA	45745	2025-06-11	2024-07-13	3.97	6.75	4.14	4.2	0.003	0.71	0.0	0.04	19.10	0.00	2.126	22.26	0.00	6.3	93.5	0.2	-1.47	0.86	0.73	0.52	4.2	0.004	0.78	0.0	0.04	20.45	0.00	2.166	22.34	2.30	6.4	93.4	0.2	-1.43	2.76	0.87	0.78	0.85	12726	1397	6	86	0	0	0	logfile
✔	9iR3	60799	2025-06-12	2024-07-13	3.19	2.61	3.23	2.2	0.006	0.64	0.0	0.04	13.70	0.00	2.141	7.89	0.00	2.9	97.0	0.1	1.73	0.76	0.76	1.97	3.1	0.005	0.70	0.0	0.04	16.40	0.00	2.510	7.62	1.72	3.3	96.6	0.1	1.75	0.46	0.77	0.78	1.83	12591	1587	7	0	2	0	0	logfile
✔	9iQY	60798	2025-06-05	2024-07-13	3.16	3.40	3.20	3.4	0.004	0.76	1.0	0.05	13.93	0.00	2.074	9.12	0.20	3.6	96.4	0.0	-0.07	0.60	0.77	2.93	3.4	0.004	0.63	0.0	0.04	15.80	0.00	1.983	8.37	2.00	3.8	96.2	0.0	0.73	0.40	0.64	0.82	2.94	4685	589	5	1	1	0	0	logfile
✔	9G40	51020	2025-06-21	2024-07-12	4.3	4.66	4.20	4.3	0.002	0.47	0.0	0.03	11.68	0.00	1.977	11.41	2.28	4.9	95.1	0.0	1.89	0.63	0.77	—	4.3	0.003	0.53	0.0	0.03	12.38	0.00	2.340	9.76	0.00	4.7	95.3	0.0	1.47	1.60	0.63	0.77	—	24900	1527	5	0	0	0	12457	logfile
✔	9iQE	60789	2025-06-07	2024-07-12	3.78	4.06	3.80	4.0	0.003	0.66	0.0	0.04	16.84	0.00	2.213	9.90	5.12	3.8	96.0	0.3	1.33	0.73	0.85	1.13	4.0	0.003	0.72	0.0	0.04	17.31	0.00	2.494	10.34	5.12	3.4	96.6	0.1	1.50	0.42	0.74	0.84	1.00	9118	1193	3	0	1	0	0	logfile
✔	9iQG	60791	2025-06-08	2024-07-12	2.7	2.91	2.72	2.9	0.004	0.56	0.0	0.04	16.54	0.00	1.913	5.93	1.99	3.0	96.8	0.2	2.07	0.63	0.86	2.74	2.9	0.003	0.55	0.0	0.04	16.93	0.00	1.934	5.44	2.83	3.0	96.8	0.2	1.99	0.87	0.64	0.87	2.34	9137	1191	4	0	5	0	0	logfile
✔	9CM5	45739	2025-06-12	2024-07-12	4.61	3.06	4.69	2.6	0.010	2.16	1.0	0.08	8.71	0.01	2.571	0.14	0.00	19.3	75.6	5.1	-3.87	0.63	0.46	—	2.3	0.005	0.98	0.0	0.05	7.08	0.01	2.249	14.32	0.00	29.0	69.4	1.6	-4.99	0.49	0.68	0.56	—	14029	1927	2	0	0	0	4396	logfile
✔	9iQF	60790	2025-06-08	2024-07-12	4.01	4.33	4.10	4.1	0.003	0.69	0.0	0.04	13.69	0.00	2.221	12.08	0.10	3.6	96.2	0.2	1.15	0.73	0.85	—	4.1	0.003	0.70	0.0	0.04	13.90	0.00	2.422	12.51	0.10	3.4	96.5	0.2	1.26	0.37	0.73	0.85	—	9118	1193	3	0	1	0	0	logfile
✔	9G3X	51017	2025-06-27	2024-07-12	4.5	6.67	4.68	4.3	0.002	0.55	0.0	0.04	5.01	0.00	2.058	2.95	0.00	3.7	96.2	0.1	0.58	0.71	0.61	—	4.4	0.003	0.60	0.0	0.04	3.81	0.00	2.386	1.09	0.00	8.1	91.9	0.0	1.44	1.66	0.74	0.65	—	32151	4506	10	0	0	0	9831	logfile
✔	9CLP	45728	2025-06-05	2024-07-12	3.43	3.82	3.38	3.8	0.012	0.53	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.003	0.57	0.0	0.04	14.16	0.00	2.274	5.55	2.19	3.3	96.7	0.0	-0.04	0.67	0.66	0.79	2.53	5035	650	5	0	11	0	0	logfile
✔	9G2R	50981	2025-06-19	2024-07-11	3.88	4.71	3.95	3.8	0.010	1.24	0.0	0.09	13.90	0.02	2.353	8.96	0.58	1.7	98.3	0.0	0.17	0.81	0.73	0.27	3.9	0.004	0.66	0.0	0.04	15.76	0.00	2.560	11.30	1.20	0.5	99.5	0.0	4.78	1.54	0.85	0.83	0.22	22620	2824	12	0	0	0	0	logfile
✔	9G2W	50986	2025-06-04	2024-07-11	3.6	4.37	3.61	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.63	0.0	0.03	16.55	0.00	2.500	7.40	1.70	1.1	98.9	0.0	5.76	0.71	0.68	0.83	0.59	3838	478	2	0	0	0	0	logfile
✔	9G2U	50984	2025-06-04	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.53	0.0	0.03	15.97	0.00	2.505	7.13	1.55	0.9	99.1	0.0	6.28	4.28	0.71	0.83	0.52	3634	456	2	0	0	0	0	logfile
✔	9iPU	60781	2025-06-19	2024-07-11	4.3	7.75	4.30	3.7	0.007	1.11	0.0	0.06	27.55	0.01	1.810	11.23	1.63	3.6	96.4	0.0	1.41	0.87	0.66	—	3.6	0.004	0.63	0.0	0.04	26.94	0.00	2.331	12.64	0.00	3.3	96.7	0.0	1.40	1.74	0.92	0.84	—	15750	1130	15	340	2	0	0	logfile

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