Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CK7	45643	2025-06-08	2024-07-08	3.45	3.77	3.60	3.7	0.005	1.04	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.004	0.78	0.0	0.04	14.32	0.00	2.405	8.80	4.29	4.9	95.1	0.0	-0.73	0.87	0.67	0.80	2.81	10026	1001	32	0	292	0	0	logfile
✔	9G0F	50932	2025-06-17	2024-07-08	3.7	4.34	3.87	4.0	0.007	0.97	2.0	0.05	18.56	0.00	1.900	9.56	1.17	2.9	97.1	0.0	0.94	0.86	0.81	1.78	4.0	0.003	0.54	0.0	0.04	17.41	0.00	1.891	7.45	1.36	2.5	97.5	0.0	1.51	0.79	0.88	0.85	1.45	20077	2389	16	32	14	0	0	logfile
✔	9iNH	60707	2025-06-09	2024-07-06	3.68	3.93	3.62	3.9	0.006	0.76	0.0	0.34	21.00	0.01	2.227	11.43	1.21	3.1	96.9	0.0	0.43	0.61	0.76	1.58	3.9	0.003	0.62	0.0	0.04	17.58	0.00	2.448	10.79	2.78	2.9	97.1	0.0	1.29	0.41	0.59	0.78	1.45	10933	1215	4	0	34	0	0	logfile
✔	9iNF	60705	2025-06-06	2024-07-06	3.36	3.58	3.31	3.6	0.003	0.67	0.0	0.04	17.90	0.00	2.212	14.77	0.56	3.5	96.5	0.0	1.40	0.57	0.80	1.29	3.6	0.004	0.66	0.0	0.04	17.03	0.00	2.470	13.16	4.65	3.8	96.2	0.0	1.80	0.35	0.55	0.81	1.22	7282	802	6	0	18	6	0	logfile
✔	9iND	60703	2025-06-06	2024-07-06	2.88	2.01	2.90	1.9	0.011	1.11	0.0	0.06	11.53	0.01	2.266	5.06	0.26	4.9	95.1	0.0	-3.25	0.76	0.77	5.00	1.9	0.003	0.67	0.0	0.05	13.91	0.00	2.524	6.95	2.34	3.9	96.1	0.0	-0.37	1.22	0.77	0.78	3.93	7644	1010	7	0	9	0	0	logfile
✔	9CJ8	45625	2025-06-08	2024-07-05	3.74	3.98	3.80	3.9	0.006	1.19	0.0	0.06	14.81	0.01	1.437	4.05	0.00	4.3	95.7	0.0	-1.31	0.65	0.76	2.04	3.9	0.004	0.91	0.0	0.05	16.11	0.00	2.418	14.12	3.22	3.5	96.5	0.0	-0.77	0.59	0.67	0.79	1.93	9750	989	22	0	269	0	0	logfile
✔	9iN6	60702	2025-06-18	2024-07-05	2.8	3.08	2.61	3.0	0.004	0.58	0.0	0.04	12.03	0.00	2.266	4.11	0.13	3.1	96.9	0.0	-0.28	0.56	0.89	4.04	3.0	0.006	0.62	0.0	0.04	14.42	0.00	2.502	4.09	1.28	2.9	97.1	0.0	-0.17	2.43	0.56	0.91	3.81	22373	2897	8	0	0	0	0	logfile
✔	9iMZ	60697	2025-06-11	2024-07-05	3.75	4.10	3.86	3.9	0.005	0.77	0.0	0.05	16.76	0.01	2.021	6.37	0.00	2.4	97.6	0.0	1.07	0.73	0.74	1.58	3.9	0.002	0.58	0.0	0.04	17.61	0.00	2.509	4.40	1.79	2.7	97.3	0.0	1.49	0.69	0.77	0.81	1.37	12167	1518	5	0	0	0	0	logfile
✔	9CJ7	45624	2025-06-10	2024-07-05	3.0	3.67	3.21	3.4	0.006	0.99	0.0	0.06	16.20	0.01	2.107	2.90	0.00	4.2	95.8	0.0	-0.13	0.85	0.86	4.17	3.4	0.003	0.69	0.0	0.04	13.79	0.00	2.486	5.67	1.91	2.6	97.4	0.0	0.79	1.17	0.82	0.83	3.44	11501	1300	38	0	89	0	0	logfile
✔	9FZ5	50893	2025-06-06	2024-07-04	3.57	3.95	3.63	4.0	0.004	0.74	1.0	0.05	18.55	0.00	2.055	8.35	6.16	9.8	89.7	0.5	-4.53	0.72	0.84	2.93	4.0	0.003	0.64	0.0	0.04	18.60	0.00	2.502	4.68	5.37	7.2	92.6	0.2	-3.50	0.37	0.69	0.84	2.62	8082	1006	3	0	0	0	0	logfile
✔	9FYR	50891	2025-06-12	2024-07-03	3.6	4.18	3.64	3.9	0.006	0.66	0.0	0.04	14.60	0.00	2.238	9.79	0.00	3.1	96.9	0.0	0.58	0.64	0.77	2.91	4.0	0.003	0.53	0.0	0.04	14.11	0.00	2.403	18.31	1.47	3.3	96.7	0.0	1.36	2.41	0.65	0.80	2.25	13315	1031	6	0	8	0	4964	logfile
✔	9iMH	60689	2025-06-06	2024-07-03	4.2	3.96	3.73	4.1	0.006	1.06	7.0	0.08	15.41	0.01	2.171	19.62	0.70	12.0	84.5	3.5	-2.10	0.51	0.74	—	4.1	0.005	1.00	0.0	0.05	15.54	0.01	2.512	16.20	0.00	13.8	84.5	1.7	-1.74	1.52	0.51	0.78	—	7674	960	6	0	0	0	0	logfile
✔	9CiA	45615	2025-06-06	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.004	0.73	0.0	0.04	16.15	0.00	2.438	13.00	4.25	4.9	95.1	0.0	-0.88	0.58	0.60	0.75	1.65	7918	1025	13	0	1	0	0	logfile
✔	9Ci1	45607	2025-06-27	2024-07-02	2.88	3.64	3.08	3.4	0.008	0.99	0.0	0.06	19.10	0.00	2.324	7.11	11.89	10.1	88.0	1.9	-2.92	0.85	0.86	3.75	3.4	0.002	0.62	0.0	0.04	17.78	0.00	2.402	3.18	1.80	6.3	92.9	0.8	-0.41	1.23	0.87	0.89	3.08	31780	4104	16	0	0	0	0	logfile
✔	9iM6	60685	2025-06-07	2024-07-02	3.21	3.45	3.24	3.4	0.003	0.62	0.0	0.04	18.98	0.01	2.142	7.20	0.20	6.4	93.2	0.4	1.15	0.65	0.84	1.89	3.4	0.003	0.60	0.0	0.04	18.96	0.00	2.571	6.20	2.13	6.3	93.5	0.3	1.67	0.29	0.65	0.84	2.06	8982	1134	2	0	0	0	0	logfile
✔	9iMA	60686	2025-06-06	2024-07-02	2.65	3.02	2.77	3.0	0.003	0.70	0.0	0.04	12.29	0.01	2.292	4.08	0.00	4.3	95.7	0.0	0.12	0.57	0.86	3.50	3.0	0.005	0.63	0.0	0.04	14.48	0.00	2.530	3.95	1.58	4.4	95.5	0.1	1.04	0.38	0.59	0.88	3.92	7472	933	6	0	6	0	0	logfile
✔	9Ci2	45608	2025-06-29	2024-07-02	2.9	3.11	2.97	3.2	0.010	1.11	0.0	0.07	19.76	0.00	1.781	7.61	14.93	10.5	87.8	1.8	-2.67	0.66	0.80	3.25	3.1	0.003	0.65	0.0	0.04	17.85	0.01	1.978	2.03	3.06	6.5	93.3	0.2	-0.61	0.53	0.78	0.89	3.44	34492	4392	20	0	8	0	0	logfile
✔	9CHV	45603	2025-06-05	2024-07-02	3.95	4.29	3.75	4.3	0.011	1.54	33.0	0.11	18.20	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.002	0.64	0.0	0.04	18.30	0.00	2.404	6.10	3.03	3.1	96.9	0.0	-0.30	1.49	0.68	0.72	0.97	6644	873	4	0	1	0	0	logfile
✔	9CHX	45604	2025-06-06	2024-07-02	3.5	3.91	3.86	3.9	0.007	0.70	0.0	0.04	17.12	0.01	2.146	9.43	0.00	4.9	95.1	0.0	-0.53	0.65	0.68	2.27	3.9	0.002	0.60	0.0	0.04	17.95	0.00	2.540	6.27	2.62	3.3	96.7	0.0	0.11	0.46	0.64	0.71	1.34	7129	889	5	0	2	0	0	logfile
✘	9CHU	45602	2025-06-06	2024-07-02	3.49	3.92	3.50	3.9	0.008	0.89	3.0	0.06	16.11	0.01	2.165	7.85	0.41	6.6	93.4	0.0	-1.06	0.71	0.80	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7009	887	5	0	2	0	0	logfile

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