Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CHV	45603	2025-06-05	2024-07-02	3.95	4.29	3.75	4.3	0.011	1.54	33.0	0.11	18.20	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.002	0.64	0.0	0.04	18.30	0.00	2.404	6.10	3.03	3.1	96.9	0.0	-0.30	1.49	0.68	0.72	0.97	6644	873	4	0	1	0	0	logfile
✔	9CHR	45599	2025-06-16	2024-07-01	3.5	3.52	3.44	3.6	0.013	1.70	0.0	0.09	11.42	0.02	2.557	0.00	0.00	2.2	97.8	0.0	-0.87	0.50	0.76	3.88	3.6	0.004	0.85	1.0	0.04	14.65	0.00	2.418	3.20	0.88	4.0	96.0	0.0	2.37	0.91	0.51	0.77	2.63	19104	1172	4	0	0	0	9596	logfile
✔	9CGZ	45589	2025-06-06	2024-07-01	2.69	2.42	2.57	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.63	0.0	0.05	17.74	0.00	2.493	4.99	1.82	7.0	93.0	0.0	-2.43	0.97	0.39	0.79	5.10	6822	438	6	0	0	0	3480	logfile
✔	9CHP	45597	2025-06-16	2024-07-01	3.3	3.33	3.28	3.4	0.013	1.75	0.0	0.09	11.61	0.02	2.568	0.00	0.00	1.8	98.2	0.0	-0.91	0.53	0.78	3.14	3.4	0.003	0.50	0.0	0.04	15.25	0.00	2.438	1.52	0.98	3.9	96.1	0.0	2.45	1.28	0.52	0.78	2.78	19104	1172	4	0	0	0	9596	logfile
✔	9FX2	50841	2025-06-08	2024-07-01	3.3	4.15	3.33	3.7	0.005	0.84	0.0	0.05	15.54	0.01	2.260	3.06	0.19	1.9	98.0	0.1	0.11	0.90	0.85	1.30	3.7	0.003	0.57	0.0	0.04	15.89	0.00	2.578	5.69	2.76	2.7	97.3	0.0	1.07	1.34	0.90	0.86	1.49	9311	1170	2	0	5	0	0	logfile
✔	9CHM	45590	2025-06-06	2024-07-01	3.47	4.54	3.49	4.2	0.004	0.82	0.0	0.04	16.49	0.00	2.176	16.62	0.35	5.8	94.2	0.0	-0.84	0.74	0.84	1.33	4.1	0.004	0.75	0.0	0.04	17.24	0.00	2.525	12.03	3.78	5.3	94.7	0.0	-0.72	1.77	0.73	0.84	1.38	7498	967	4	0	0	0	0	logfile
✔	9CHS	45600	2025-06-16	2024-07-01	3.4	3.17	3.29	3.3	0.013	1.70	0.0	0.09	11.67	0.02	2.560	0.00	0.00	1.9	98.1	0.0	-0.93	0.52	0.79	3.56	3.3	0.003	0.51	0.0	0.04	14.74	0.00	2.427	2.67	1.27	2.8	97.2	0.0	2.58	1.72	0.51	0.80	2.49	19104	1172	4	0	0	0	9596	logfile
✔	9FX3	50842	2025-06-08	2024-07-01	3.2	3.90	3.46	3.7	0.005	0.92	0.0	0.06	14.83	0.01	2.280	4.31	0.57	2.5	97.5	0.0	-0.71	0.80	0.79	2.49	3.7	0.003	0.55	0.0	0.04	14.83	0.00	2.541	5.94	2.84	2.1	97.9	0.0	1.15	1.34	0.84	0.84	2.67	9511	1178	6	0	15	0	0	logfile
✔	9CGX	45588	2025-06-06	2024-07-01	2.97	2.72	2.89	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.42	0.00	2.530	3.74	1.28	7.9	91.9	0.2	-2.78	1.38	0.36	0.78	4.88	6960	444	6	0	0	0	3540	logfile
✔	9CHQ	45598	2025-06-16	2024-07-01	3.0	2.94	3.00	3.2	0.013	1.73	4.0	0.09	11.63	0.02	2.549	0.00	0.00	1.4	98.6	0.0	-0.39	0.51	0.78	3.82	3.2	0.003	0.53	0.0	0.04	16.04	0.01	2.545	1.78	1.18	2.4	97.6	0.0	2.60	1.72	0.49	0.78	3.35	19104	1172	4	0	0	0	9596	logfile
✘	9CGi	45580	2025-06-13	2024-06-29	2.92	3.60	3.10	3.4	0.005	0.88	2.0	0.05	12.93	0.01	2.249	3.35	0.24	2.3	97.7	0.0	-0.05	0.85	0.88	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14751	1839	5	0	0	0	0	logfile
✔	9CG4	45568	2025-06-07	2024-06-28	3.37	4.27	3.50	3.9	0.003	0.61	0.0	0.04	19.71	0.00	2.236	9.08	0.35	4.6	95.4	0.0	-0.68	0.83	0.81	1.95	3.9	0.003	0.64	0.0	0.04	19.93	0.00	2.086	6.70	2.48	3.9	96.0	0.1	0.13	0.48	0.81	0.82	2.02	8375	966	6	43	0	0	0	logfile
✔	9iKC	60655	2025-06-11	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.005	0.70	0.0	0.05	15.89	0.00	2.532	3.08	1.00	2.7	97.3	0.0	-0.21	1.14	0.75	0.89	6.63	12555	1587	6	0	0	150	0	logfile
✘	9CET	45518	2025-06-12	2024-06-27	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14090	596	5	134	1	0	6375	logfile
✘	9CEW	45521	2025-06-13	2024-06-27	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15163	600	7	166	3	0	6758	logfile
✘	9CEX	45522	2025-06-12	2024-06-27	3.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14679	600	8	151	3	3	6578	logfile
✔	9CF2	45527	2025-06-16	2024-06-27	3.15	2.38	3.24	2.8	0.002	0.61	0.0	0.04	18.51	0.00	1.441	3.97	0.00	1.4	98.6	0.0	2.60	0.67	0.60	2.80	2.8	0.005	0.63	0.0	0.04	21.11	0.00	2.289	6.09	0.88	4.5	95.5	0.0	0.85	1.45	0.75	0.78	3.33	18387	888	7	121	0	0	8649	logfile
✔	9iKK	60657	2025-06-24	2024-06-27	3.51	3.86	3.59	3.9	0.003	0.70	0.0	0.04	15.43	0.00	2.199	12.01	0.52	5.2	94.8	0.0	-1.86	0.66	0.80	2.25	3.8	0.003	0.69	0.0	0.04	16.26	0.00	2.419	9.42	3.21	7.4	92.6	0.0	-2.54	1.67	0.67	0.83	2.03	28480	3792	16	0	0	0	0	logfile
✔	9CF3	45528	2025-06-15	2024-06-27	3.2	3.49	3.30	3.5	0.002	0.72	0.0	0.05	18.41	0.00	1.968	5.72	0.00	2.2	97.8	0.0	2.31	0.66	0.61	3.23	3.5	0.003	0.60	0.0	0.04	20.52	0.00	2.211	5.49	1.39	3.9	96.1	0.0	1.22	2.77	0.74	0.80	3.18	17651	888	5	98	0	0	8383	logfile
✔	9CFW	45565	2025-06-13	2024-06-27	3.0	3.62	2.92	3.5	0.013	1.83	1.0	0.09	14.92	0.02	1.823	0.29	1.88	4.4	95.5	0.2	-1.69	0.72	0.64	2.79	3.5	0.003	0.71	0.0	0.04	16.22	0.00	1.862	8.14	2.29	3.0	97.0	0.0	0.62	0.73	0.80	0.81	2.18	15838	1981	9	0	7	0	0	logfile

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