Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9CET	45518	2025-06-12	2024-06-27	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14090	596	5	134	1	0	6375	logfile
✔	9CFL	45550	2025-06-07	2024-06-27	2.3	2.52	2.42	2.7	0.008	1.21	2.0	0.07	25.65	0.02	1.887	3.76	3.83	1.1	98.9	0.0	-0.09	0.63	0.81	3.96	2.7	0.003	0.59	0.0	0.05	18.90	0.00	1.977	5.48	2.34	1.3	98.7	0.0	1.48	1.13	0.60	0.80	3.44	8925	1068	10	0	7	8	0	logfile
✔	9iKK	60657	2025-06-24	2024-06-27	3.51	3.86	3.59	3.9	0.003	0.70	0.0	0.04	15.43	0.00	2.199	12.01	0.52	5.2	94.8	0.0	-1.86	0.66	0.80	2.25	3.8	0.003	0.69	0.0	0.04	16.26	0.00	2.419	9.42	3.21	7.4	92.6	0.0	-2.54	1.67	0.67	0.83	2.03	28480	3792	16	0	0	0	0	logfile
✘	9CEU	45519	2025-06-11	2024-06-27	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13398	607	5	108	1	0	6141	logfile
✘	9CEV	45520	2025-06-12	2024-06-27	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14047	600	6	131	3	3	6353	logfile
✘	9CEX	45522	2025-06-12	2024-06-27	3.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14679	600	8	151	3	3	6578	logfile
✔	9iKC	60655	2025-06-11	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.005	0.70	0.0	0.05	15.89	0.00	2.532	3.08	1.00	2.7	97.3	0.0	-0.21	1.14	0.75	0.89	6.63	12555	1587	6	0	0	150	0	logfile
✘	9CER	45516	2025-06-12	2024-06-27	4.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14598	612	2	142	0	0	6561	logfile
✔	9iKJ	60656	2025-06-24	2024-06-27	3.22	3.48	3.25	3.5	0.004	0.65	0.0	0.04	15.33	0.01	1.891	10.81	1.29	8.8	91.2	0.0	-3.09	0.65	0.86	3.27	3.5	0.008	0.79	0.0	0.05	16.32	0.01	2.459	8.02	3.12	10.8	89.2	0.0	-3.22	1.17	0.68	0.88	3.45	28464	3776	16	0	0	0	0	logfile
✘	9CEY	45523	2025-06-12	2024-06-27	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13829	607	6	121	3	3	6298	logfile
✔	9CF0	45525	2025-06-15	2024-06-27	3.47	3.80	3.64	3.7	0.013	1.83	2.0	0.10	20.15	0.02	1.887	0.70	0.00	4.3	95.2	0.5	-1.20	0.71	0.62	2.71	3.7	0.004	0.66	0.0	0.04	20.54	0.00	2.355	5.98	1.14	5.3	94.6	0.1	0.57	1.00	0.77	0.80	2.31	17040	888	5	79	0	0	8166	logfile
✔	9CFV	45564	2025-06-13	2024-06-27	2.7	3.03	1.99	3.0	0.012	1.86	5.0	0.10	14.56	0.02	1.853	0.32	2.20	3.4	96.4	0.2	-1.64	0.50	0.66	3.63	3.0	0.004	0.68	0.0	0.04	16.43	0.00	2.005	5.56	2.55	2.6	97.3	0.1	0.89	0.59	0.60	0.80	3.03	15664	1961	8	0	6	0	0	logfile
✔	9FUQ	50774	2025-06-07	2024-06-26	3.8	3.88	3.57	3.8	0.005	0.75	0.0	0.04	13.92	0.00	2.209	6.72	0.41	7.8	92.1	0.1	-4.19	0.64	0.81	1.29	3.8	0.002	0.70	0.0	0.04	15.80	0.00	2.524	4.84	2.17	6.2	93.7	0.1	-1.78	0.59	0.69	0.81	0.86	8924	1138	4	0	2	0	0	logfile
✔	9FUS	50776	2025-06-07	2024-06-26	3.8	3.75	3.43	3.7	0.004	0.72	0.0	0.04	12.69	0.00	1.817	5.14	0.10	6.6	93.2	0.2	-2.08	0.66	0.80	1.59	3.7	0.004	0.72	0.0	0.04	15.71	0.00	2.459	10.45	3.00	6.6	93.4	0.0	-0.73	0.90	0.69	0.78	1.82	8822	1138	2	0	0	0	0	logfile
✔	9FV7	50791	2025-06-07	2024-06-26	4.0	4.46	4.11	4.3	0.006	1.18	0.0	0.06	16.98	0.01	2.244	10.39	0.93	4.1	95.6	0.3	-2.26	0.75	0.81	—	4.2	0.004	0.72	0.0	0.04	17.25	0.00	2.529	15.03	5.06	4.5	95.5	0.0	0.91	0.86	0.76	0.83	—	8822	1138	2	0	0	0	0	logfile
✔	9FUU	50778	2025-06-07	2024-06-26	3.6	3.63	3.34	3.6	0.005	0.69	0.0	0.04	17.55	0.00	2.163	9.05	0.62	5.4	94.6	0.0	-3.08	0.65	0.83	0.99	3.6	0.003	0.68	0.0	0.04	18.08	0.00	2.499	8.60	5.17	4.6	95.3	0.1	-1.95	0.82	0.63	0.80	1.10	8822	1138	2	0	0	0	0	logfile
✔	9FV6	50790	2025-06-07	2024-06-26	3.8	4.65	3.83	4.1	0.005	0.89	0.0	0.04	15.83	0.01	2.203	6.31	0.31	5.1	94.7	0.2	0.54	0.80	0.85	0.70	4.1	0.003	0.72	0.0	0.04	16.50	0.00	2.581	12.96	2.07	4.3	95.6	0.1	1.46	0.49	0.80	0.86	0.89	8822	1138	2	0	0	0	0	logfile
✔	9FVA	50794	2025-06-07	2024-06-26	4.4	4.69	4.51	4.5	0.005	1.04	0.0	0.05	16.48	0.01	2.206	7.15	0.72	6.6	93.3	0.1	-1.42	0.66	0.76	—	4.5	0.003	0.76	0.0	0.04	14.57	0.00	2.332	14.41	0.00	5.7	94.3	0.0	-0.49	1.53	0.68	0.77	—	8822	1138	2	0	0	0	0	logfile
✔	9FUZ	50783	2025-06-07	2024-06-26	4.2	4.66	4.30	4.4	0.005	0.98	0.0	0.05	16.67	0.01	2.201	8.32	0.62	4.6	95.1	0.3	-0.25	0.68	0.81	—	4.4	0.004	0.69	0.0	0.04	13.95	0.00	2.418	14.41	0.00	4.9	94.7	0.4	1.04	1.01	0.68	0.81	—	8822	1138	2	0	0	0	0	logfile
✘	9iK9	60651	2025-06-15	2024-06-26	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16993	1124	9	0	6	0	8388	logfile

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