Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iiG	60594	2025-06-25	2024-06-20	2.6	2.83	2.69	2.8	0.008	0.74	0.0	0.04	15.76	0.01	2.189	9.23	0.00	0.6	99.4	0.0	-0.32	0.67	0.84	4.00	2.8	0.006	0.51	0.0	0.03	18.58	0.00	2.550	7.29	1.32	0.7	99.3	0.0	4.40	0.69	0.64	0.84	3.68	30876	3744	36	0	12	0	0	logfile
✔	9CC3	45433	2025-06-22	2024-06-20	3.23	3.69	3.26	3.5	0.002	0.55	0.0	0.04	12.88	0.00	2.068	4.56	0.00	1.4	98.6	0.0	1.22	0.79	0.83	2.26	3.5	0.004	0.60	0.0	0.04	14.56	0.00	1.911	4.85	1.44	2.1	97.9	0.0	1.22	1.87	0.79	0.85	2.18	25779	3323	11	0	38	0	0	logfile
✔	9CC0	45430	2025-06-21	2024-06-20	3.31	3.66	3.24	3.5	0.003	0.54	0.0	0.04	13.25	0.00	1.995	5.51	0.08	1.9	98.1	0.0	1.17	0.83	0.85	2.83	3.5	0.002	0.54	0.0	0.04	14.71	0.00	2.012	4.60	0.83	1.7	98.3	0.0	1.49	0.32	0.84	0.87	2.20	24603	3128	13	0	22	0	0	logfile
✔	9CBZ	45429	2025-06-13	2024-06-20	2.86	2.52	2.85	2.9	0.005	0.65	0.0	0.05	13.20	0.00	1.462	6.02	0.00	2.8	97.2	0.0	1.11	0.53	0.60	0.52	2.8	0.004	0.58	0.0	0.04	15.69	0.00	2.501	6.44	1.24	1.9	98.1	0.0	1.59	1.46	0.69	0.90	3.66	15424	1892	8	0	8	0	0	logfile
✔	9ii3	60589	2025-06-14	2024-06-19	3.9	3.97	—	3.9	0.004	0.62	0.0	0.04	12.82	0.00	2.110	13.02	0.00	6.4	93.6	0.0	-0.92	0.80	0.72	1.33	3.8	0.003	0.69	0.0	0.04	15.43	0.00	2.336	11.35	1.90	6.6	93.4	0.0	-1.16	1.23	0.81	0.73	0.88	16488	2156	10	0	6	0	0	logfile
✔	8ZYW	60581	2025-06-07	2024-06-18	3.43	3.41	3.36	3.6	0.003	0.55	0.0	0.04	17.93	0.00	2.109	8.67	0.32	1.7	98.3	0.0	3.05	0.60	0.78	0.40	3.6	0.003	0.49	0.0	0.04	18.36	0.00	2.502	6.57	2.77	1.7	98.3	0.0	3.90	0.27	0.56	0.79	0.54	8910	1174	10	0	0	4	0	logfile
✔	8ZZ0	60585	2025-06-07	2024-06-18	3.43	3.30	3.36	3.5	0.003	0.58	0.0	0.04	17.58	0.01	2.123	9.76	0.00	1.9	98.1	0.0	2.96	0.67	0.80	0.46	3.5	0.003	0.54	0.0	0.04	17.85	0.00	2.506	7.28	1.17	1.6	98.4	0.0	3.88	1.40	0.66	0.78	0.51	8914	1174	10	0	0	3	0	logfile
✔	9CAX	45406	2025-06-04	2024-06-18	3.37	3.55	3.26	3.5	0.005	0.92	0.0	0.05	16.47	0.01	2.234	5.04	0.00	4.5	95.3	0.2	-2.36	0.61	0.83	2.06	3.5	0.003	0.68	0.0	0.04	17.26	0.00	2.499	8.31	2.58	4.1	95.7	0.2	1.96	0.51	0.62	0.85	2.17	3611	470	1	0	0	0	0	logfile
✔	9FR4	50708	2025-06-05	2024-06-18	3.1	3.44	3.07	3.5	0.004	0.68	0.0	0.04	13.90	0.00	2.125	5.93	0.00	5.9	94.1	0.0	-3.57	0.60	0.80	2.99	3.5	0.003	0.54	0.0	0.04	16.24	0.00	2.430	3.71	3.67	5.4	94.6	0.0	-1.62	0.38	0.56	0.79	2.83	4874	614	4	0	0	0	0	logfile
✔	8ZYQ	60576	2025-06-05	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.56	0.0	0.04	16.22	0.00	2.514	5.69	2.73	2.7	97.3	0.0	1.68	0.37	0.56	0.85	2.67	6329	796	5	0	1	0	0	logfile
✔	8ZYo	60574	2025-06-05	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.002	0.52	0.0	0.04	16.49	0.00	2.552	5.63	3.41	2.3	97.7	0.0	2.36	0.31	0.57	0.84	1.67	6238	785	5	0	1	0	0	logfile
✔	9ii2	60588	2025-06-18	2024-06-18	3.7	2.39	—	2.2	0.004	0.51	0.0	0.04	12.87	0.00	2.029	8.98	0.00	3.8	96.2	0.0	0.72	0.69	0.65	1.25	3.4	0.003	0.63	0.0	0.04	15.57	0.00	2.452	11.12	2.24	4.2	95.7	0.1	-0.23	0.85	0.71	0.69	1.75	21112	2750	12	0	10	0	0	logfile
✔	9CB1	45412	2025-06-13	2024-06-18	4.24	6.55	4.24	4.4	0.006	0.87	0.0	0.06	10.32	0.01	2.256	6.86	0.72	3.5	96.3	0.2	-0.53	0.84	0.80	—	4.4	0.003	0.60	0.0	0.04	11.48	0.00	2.499	13.29	0.00	3.1	96.9	0.0	0.42	3.12	0.87	0.85	—	15105	1968	12	0	6	0	0	logfile
✔	8ZYN	60573	2025-06-05	2024-06-18	3.27	3.51	3.25	3.4	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.56	0.0	0.04	15.67	0.00	2.627	5.34	3.46	2.8	97.2	0.0	1.22	0.35	0.58	0.83	1.14	6640	840	4	0	0	0	0	logfile
✔	8ZYV	60580	2025-06-07	2024-06-18	3.12	2.96	3.01	3.2	0.003	0.49	0.0	0.03	17.75	0.00	2.173	7.29	0.43	1.6	98.4	0.0	3.33	0.60	0.82	1.10	3.2	0.004	0.52	0.0	0.04	17.90	0.00	2.413	7.73	2.77	2.2	97.8	0.0	3.63	0.25	0.57	0.81	0.94	8913	1174	10	0	2	5	0	logfile
✔	8ZYM	60572	2025-06-14	2024-06-18	3.23	3.47	3.25	3.4	0.003	0.56	0.0	0.04	16.50	0.00	2.139	13.04	3.83	4.5	95.5	0.0	-0.56	0.73	0.75	1.68	3.4	0.004	0.64	0.0	0.05	16.67	0.00	2.522	10.61	4.21	5.6	94.4	0.0	-0.44	0.30	0.73	0.75	1.56	15829	2055	10	0	0	1	0	logfile
✘	9CB3	45413	2025-06-05	2024-06-18	3.47	3.78	3.64	3.8	0.015	1.61	1.0	0.05	18.76	0.01	1.293	12.53	1.46	5.0	95.0	0.0	0.03	0.57	0.68	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4995	672	3	0	0	0	0	logfile
✔	9CBB	45421	2025-06-06	2024-06-18	4.15	4.29	4.00	4.2	0.007	0.92	0.0	0.04	14.26	0.01	2.221	3.12	0.00	6.2	93.8	0.0	-2.08	0.49	0.73	—	4.2	0.003	0.63	0.0	0.04	14.04	0.00	2.379	7.88	0.00	7.3	92.7	0.0	-0.08	0.96	0.49	0.74	—	7356	470	2	0	1	0	3733	logfile
✔	8ZYZ	60584	2025-06-07	2024-06-18	3.16	2.82	3.04	3.1	0.004	0.53	0.0	0.04	18.05	0.00	2.087	8.66	0.11	2.1	97.9	0.0	3.30	0.60	0.80	1.20	3.1	0.003	0.49	0.0	0.04	18.11	0.00	2.526	7.45	1.70	2.0	98.0	0.0	4.18	1.38	0.56	0.76	1.35	8918	1174	12	0	2	5	0	logfile
✔	9CAG	45390	2025-06-05	2024-06-17	3.33	2.37	3.31	2.2	0.004	0.63	0.0	0.05	15.05	0.00	2.063	9.61	0.15	4.7	95.2	0.1	0.57	0.77	0.79	3.15	2.2	0.002	0.53	0.0	0.04	17.55	0.00	2.083	6.38	1.80	3.8	96.1	0.1	0.65	0.36	0.79	0.82	2.68	6231	773	4	8	2	0	0	logfile

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