Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8ZYD	60562	2025-06-06	2024-06-17	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7058	728	6	73	2	0	0	logfile
✔	9CAH	45391	2025-06-06	2024-06-17	3.16	2.35	3.20	2.1	0.004	0.62	0.0	0.04	14.90	0.00	2.049	8.60	0.13	7.2	92.6	0.2	-0.12	0.76	0.78	2.31	2.1	0.004	0.65	0.0	0.04	16.98	0.00	2.109	7.47	2.67	7.2	92.8	0.0	-0.05	0.36	0.79	0.82	2.63	7116	907	3	0	4	0	0	logfile
✔	9CAP	45399	2025-06-12	2024-06-17	2.7	3.22	2.66	3.0	0.012	1.49	0.0	0.05	21.88	0.00	2.249	7.40	0.21	2.5	97.5	0.0	0.30	0.74	0.87	4.55	3.0	0.008	0.77	0.0	0.04	18.59	0.00	2.401	6.89	1.89	2.4	97.6	0.0	0.43	1.01	0.75	0.88	3.80	13783	1613	3	0	30	0	0	logfile
✘	8ZYC	60561	2025-06-06	2024-06-17	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7058	728	6	73	2	0	0	logfile
✔	9CAL	45395	2025-06-05	2024-06-17	3.15	2.36	3.09	2.1	0.004	0.68	0.0	0.04	15.36	0.01	2.136	5.47	0.00	3.9	96.1	0.0	-0.07	0.77	0.80	2.39	2.1	0.003	0.55	0.0	0.04	17.55	0.00	2.243	5.63	1.80	4.2	95.8	0.0	0.64	0.31	0.80	0.83	2.27	6268	773	5	10	1	0	0	logfile
✔	9CAG	45390	2025-06-05	2024-06-17	3.33	2.37	3.31	2.2	0.004	0.63	0.0	0.05	15.05	0.00	2.063	9.61	0.15	4.7	95.2	0.1	0.57	0.77	0.79	3.15	2.2	0.002	0.53	0.0	0.04	17.55	0.00	2.083	6.38	1.80	3.8	96.1	0.1	0.65	0.36	0.79	0.82	2.68	6231	773	4	8	2	0	0	logfile
✔	9CAJ	45393	2025-06-05	2024-06-17	3.51	2.46	3.38	2.2	0.004	0.66	0.0	0.04	15.92	0.01	2.088	12.57	0.45	4.8	95.2	0.0	-0.25	0.77	0.76	2.72	2.2	0.004	0.66	0.0	0.04	17.50	0.00	2.075	7.98	2.69	5.2	94.7	0.1	-0.28	0.40	0.77	0.77	2.25	6245	773	4	9	1	0	0	logfile
✔	9C9W	45374	2025-06-12	2024-06-16	4.25	3.29	4.36	2.2	0.005	0.80	0.0	0.04	19.22	0.01	2.070	19.12	0.15	9.6	90.2	0.2	-1.54	0.72	0.69	—	2.1	0.003	0.78	0.0	0.04	19.21	0.00	2.281	13.96	0.00	8.4	91.5	0.1	-1.18	1.43	0.72	0.71	—	13761	1546	8	80	1	0	0	logfile
✘	9C9Y	45376	2025-06-05	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6225	773	4	8	2	0	0	logfile
✔	8ZY5	60556	2025-06-21	2024-06-16	3.8	3.56	3.78	3.6	0.005	0.97	0.0	0.06	14.40	0.01	2.283	5.19	0.23	6.7	93.2	0.2	-2.39	0.72	0.78	2.46	3.6	0.004	0.69	0.0	0.05	14.93	0.00	2.377	7.94	3.18	6.6	93.4	0.0	-1.24	0.41	0.73	0.80	2.47	24450	3030	15	0	63	0	0	logfile
✔	9CA4	45380	2025-06-05	2024-06-16	3.01	2.50	3.43	2.2	0.005	0.87	1.0	0.04	14.82	0.01	2.091	6.79	0.00	5.2	94.6	0.1	-0.38	0.76	0.79	2.74	2.2	0.004	0.62	0.0	0.04	17.20	0.00	2.180	5.90	2.55	5.0	95.0	0.0	0.21	0.93	0.78	0.81	1.99	6230	773	5	8	2	0	0	logfile
✔	8ZY9	60559	2025-06-13	2024-06-16	2.7	3.68	2.75	3.2	0.004	0.74	0.0	0.05	13.65	0.01	2.252	3.43	0.00	4.6	95.4	0.1	-1.83	0.87	0.87	2.96	3.3	0.003	0.61	0.0	0.04	14.80	0.00	2.558	5.19	0.77	3.5	96.5	0.0	0.66	0.82	0.86	0.87	2.74	14481	1749	12	0	16	0	0	logfile
✔	9CA0	45378	2025-06-05	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.003	0.55	0.0	0.04	17.27	0.00	2.493	6.27	3.00	3.9	96.1	0.0	-0.44	0.35	0.79	0.81	1.61	6265	773	5	10	1	0	0	logfile
✔	8ZY1	60552	2025-06-22	2024-06-16	3.1	2.59	3.05	3.1	0.003	0.62	0.0	0.05	16.06	0.00	2.206	3.38	3.65	3.3	96.7	0.0	-1.60	0.73	0.85	2.54	3.1	0.003	0.72	2.0	0.04	15.83	0.00	2.169	3.79	4.15	3.3	96.7	0.0	-0.79	0.31	0.73	0.86	2.60	26025	3228	15	0	66	0	0	logfile
✔	8ZY7	60558	2025-06-22	2024-06-16	3.45	3.67	3.43	3.6	0.003	0.69	0.0	0.05	15.43	0.00	2.267	2.88	3.66	3.7	96.3	0.0	-1.90	0.82	0.86	1.95	3.6	0.002	0.59	0.0	0.05	15.50	0.00	2.447	3.00	3.37	3.5	96.5	0.0	-0.93	0.23	0.82	0.88	1.83	25890	3195	24	0	69	0	0	logfile
✔	8ZY2	60553	2025-06-23	2024-06-16	2.9	3.71	2.92	3.3	0.006	0.79	2.0	0.05	14.21	0.01	2.276	3.26	0.17	3.4	96.6	0.0	-0.77	0.89	0.88	3.57	3.3	0.002	0.55	0.0	0.04	14.16	0.00	2.527	3.31	0.90	2.8	97.2	0.0	0.23	0.25	0.89	0.88	3.38	27099	3309	27	0	81	0	0	logfile
✔	8ZY3	60554	2025-06-22	2024-06-16	3.3	3.49	3.24	3.3	0.005	0.80	0.0	0.06	13.58	0.00	2.262	4.92	0.00	5.0	95.0	0.0	-1.90	0.87	0.87	3.06	3.3	0.003	0.61	0.0	0.05	13.93	0.00	2.524	5.14	1.03	4.1	95.9	0.0	-0.59	0.33	0.88	0.89	2.87	26295	3270	12	0	60	0	0	logfile
✔	8ZY0	60551	2025-06-22	2024-06-16	3.0	3.09	2.87	3.1	0.005	0.76	0.0	0.05	13.97	0.01	2.240	3.50	0.07	4.6	95.4	0.0	-1.75	0.79	0.84	3.38	3.0	0.003	0.64	0.0	0.04	14.73	0.00	2.412	4.32	1.82	3.7	96.3	0.0	-0.96	1.18	0.82	0.88	3.09	26611	3276	12	0	73	0	0	logfile
✔	9CA1	45379	2025-06-05	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.58	0.0	0.04	17.60	0.00	2.094	5.79	3.15	4.0	96.0	0.0	0.22	0.31	0.79	0.82	1.62	6265	773	5	10	2	0	0	logfile
✔	8ZY4	60555	2025-06-22	2024-06-16	2.53	3.34	2.56	3.0	0.004	0.69	0.0	0.05	15.75	0.01	2.222	3.18	2.47	4.1	95.9	0.0	-1.62	0.86	0.87	3.28	3.0	0.007	0.71	0.0	0.05	15.61	0.00	2.404	4.17	2.51	6.0	94.0	0.0	-0.80	0.31	0.87	0.89	3.23	26181	3219	21	0	75	0	0	logfile

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