Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9C9Y	45376	2025-06-05	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6225	773	4	8	2	0	0	logfile
✔	9C9U	45371	2025-06-04	2024-06-15	4.5	4.04	3.57	3.8	0.011	1.48	0.0	0.07	15.52	0.01	2.048	19.72	0.00	10.7	89.3	0.0	-3.13	0.72	0.61	—	3.8	0.003	1.23	0.0	0.09	16.30	0.01	2.288	19.21	0.00	11.3	88.7	0.0	-3.25	1.85	0.78	0.76	—	3018	444	18	0	0	0	0	logfile
✔	8ZXK	60542	2025-06-10	2024-06-14	2.76	2.94	2.77	3.0	0.003	0.54	0.0	0.04	16.40	0.00	2.171	8.86	0.16	4.7	95.3	0.0	2.48	0.72	0.81	2.31	3.0	0.003	0.54	0.0	0.04	16.87	0.00	2.468	8.48	3.82	4.4	95.6	0.0	2.71	0.19	0.61	0.81	2.36	11653	1490	6	0	3	0	0	logfile
✔	8ZXM	60544	2025-06-04	2024-06-14	3.39	3.80	3.41	3.8	0.009	1.32	0.0	0.08	13.58	0.01	2.540	0.40	1.80	3.0	97.0	0.0	-3.84	0.45	0.72	2.72	3.8	0.003	0.61	0.0	0.04	14.83	0.00	2.601	2.82	2.58	2.8	97.2	0.0	1.38	0.53	0.49	0.73	0.99	3665	471	3	0	3	0	0	logfile
✔	8ZXD	60540	2025-06-17	2024-06-14	2.9	3.66	3.09	3.6	0.002	0.41	0.0	0.03	12.72	0.00	2.255	5.31	0.00	2.1	97.9	0.0	2.78	0.54	0.70	1.63	3.6	0.003	0.59	0.0	0.04	15.29	0.00	2.409	6.09	1.73	1.9	98.1	0.0	2.21	1.40	0.55	0.73	1.80	19518	2328	12	0	18	0	0	logfile
✔	8ZXN	60545	2025-06-04	2024-06-14	3.06	3.28	2.99	3.3	0.009	1.27	0.0	0.08	12.40	0.01	2.516	0.13	0.77	1.5	98.5	0.0	-3.05	0.49	0.77	3.38	3.3	0.003	0.61	0.0	0.04	14.79	0.00	2.518	2.29	2.06	2.6	97.4	0.0	2.27	0.48	0.54	0.79	2.51	3653	471	2	0	2	0	0	logfile
✔	8ZXP	60548	2025-06-10	2024-06-14	3.09	3.32	3.13	3.5	0.005	0.98	0.0	0.05	16.93	0.01	2.297	4.76	0.41	5.2	94.8	0.0	-1.54	0.59	0.80	2.09	3.5	0.003	0.56	0.0	0.04	16.97	0.00	2.614	7.88	3.52	3.5	96.5	0.0	2.14	0.32	0.58	0.79	1.90	11586	1482	6	0	3	0	0	logfile
✔	9FQ0	50642	2025-06-27	2024-06-14	4.67	7.96	4.69	5.9	0.005	1.10	1.0	0.13	20.50	0.01	2.021	31.09	2.23	4.5	94.9	0.6	-0.08	0.25	0.45	—	5.2	0.003	0.81	0.0	0.04	20.03	0.01	2.037	20.86	0.04	4.7	95.1	0.1	-1.25	1.46	0.29	0.63	—	31676	2961	17	356	1	0	0	logfile
✔	9FPZ	50641	2025-06-25	2024-06-14	2.69	4.22	2.88	3.3	0.003	0.74	0.0	0.13	20.32	0.00	1.268	14.64	1.41	3.2	96.7	0.1	0.38	0.29	0.80	2.02	3.3	0.003	0.80	0.0	0.04	20.52	0.00	1.277	11.65	2.43	2.9	97.1	0.0	0.19	0.51	0.30	0.87	1.90	29394	2666	15	358	3	0	0	logfile
✔	8ZWi	60528	2025-06-04	2024-06-13	3.0	2.75	2.10	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.007	1.50	0.0	0.05	15.19	0.00	2.615	5.19	1.94	2.3	97.7	0.0	-1.91	0.90	0.43	0.86	5.50	2526	366	6	0	0	0	0	logfile
✔	8ZWM	60533	2025-06-04	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.003	0.56	0.0	0.05	14.66	0.00	2.611	3.43	1.53	2.5	97.5	0.0	-2.45	1.25	0.33	0.91	6.11	3435	453	6	0	0	0	0	logfile
✔	8ZWH	60527	2025-06-04	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.003	0.54	0.0	0.05	11.81	0.00	2.634	6.21	1.32	6.9	93.1	0.0	-3.38	1.17	0.43	0.85	3.48	2268	330	6	0	0	0	0	logfile
✔	8ZWL	60532	2025-06-04	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.004	0.66	0.0	0.05	13.64	0.00	2.615	4.67	2.27	2.3	97.7	0.0	-3.02	0.51	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8ZX6	60539	2025-06-04	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.006	0.79	0.0	0.05	14.26	0.00	2.631	6.51	1.52	10.6	89.4	0.0	-3.65	0.72	0.35	0.84	5.17	3468	456	6	0	0	0	0	logfile
✔	8ZWK	60530	2025-06-04	2024-06-13	3.4	2.76	2.78	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.60	0.0	0.05	17.06	0.00	2.600	6.09	6.67	8.2	91.8	0.0	-3.62	1.50	0.36	0.82	4.52	2760	378	8	6	0	0	0	logfile
✔	8ZWJ	60529	2025-06-04	2024-06-13	3.1	2.80	2.16	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.002	0.45	0.0	0.05	15.68	0.00	2.572	2.33	2.96	7.9	92.1	0.0	-2.11	1.29	0.41	0.85	4.61	2760	378	8	6	0	0	0	logfile
✔	9C91	45359	2025-06-07	2024-06-13	2.84	2.98	2.80	39.0	0.005	0.76	0.0	0.04	18.11	0.00	2.194	11.02	2.64	3.5	96.3	0.2	0.30	0.06	0.00	0.50	40.0	0.004	0.90	0.0	0.05	18.62	0.01	2.239	14.80	3.52	6.0	93.8	0.2	-0.54	1.55	0.09	0.05	0.24	8784	1088	4	0	6	0	0	logfile
✔	8ZW6	60517	2025-06-10	2024-06-12	2.75	2.23	2.81	2.0	0.003	0.63	0.0	0.05	15.48	0.00	2.165	2.11	0.00	1.9	98.1	0.0	0.79	0.84	0.82	4.02	2.0	0.003	0.55	0.0	0.04	16.11	0.00	2.462	2.37	2.05	2.0	98.0	0.0	0.77	0.98	0.84	0.86	3.89	11822	1447	15	0	30	0	0	logfile
✔	8ZW0	60514	2025-06-07	2024-06-12	2.72	3.23	2.86	3.2	0.005	0.73	0.0	0.04	13.06	0.01	2.057	7.19	1.55	2.5	96.5	1.1	-0.61	0.63	0.74	2.91	3.2	0.003	0.55	0.0	0.04	15.67	0.00	2.596	5.11	3.76	2.7	97.3	0.0	1.62	1.27	0.52	0.77	3.22	8431	1064	6	0	3	0	0	logfile
✔	8ZW7	60518	2025-06-10	2024-06-12	2.09	3.12	2.17	2.7	0.003	0.60	0.0	0.04	16.85	0.00	2.185	2.32	0.39	1.5	98.5	0.0	1.44	0.88	0.93	4.59	2.7	0.003	0.50	0.0	0.04	15.64	0.00	2.467	1.46	0.08	1.6	98.4	0.0	1.40	0.19	0.88	0.93	4.43	11896	1456	15	0	30	0	0	logfile

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