Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZW6	60517	2025-06-10	2024-06-12	2.75	2.23	2.81	2.0	0.003	0.63	0.0	0.05	15.48	0.00	2.165	2.11	0.00	1.9	98.1	0.0	0.79	0.84	0.82	4.02	2.0	0.003	0.55	0.0	0.04	16.11	0.00	2.462	2.37	2.05	2.0	98.0	0.0	0.77	0.98	0.84	0.86	3.89	11822	1447	15	0	30	0	0	logfile
✔	8ZW8	60519	2025-06-10	2024-06-12	3.05	3.27	3.06	3.3	0.003	0.60	0.0	0.04	16.41	0.00	2.140	9.12	0.65	3.8	96.2	0.0	1.59	0.63	0.82	1.79	3.3	0.003	0.55	0.0	0.04	16.59	0.00	2.547	6.09	3.25	3.9	96.1	0.0	1.96	0.23	0.63	0.82	2.26	11652	1491	3	0	0	0	0	logfile
✔	8ZW7	60518	2025-06-10	2024-06-12	2.09	3.12	2.17	2.7	0.003	0.60	0.0	0.04	16.85	0.00	2.185	2.32	0.39	1.5	98.5	0.0	1.44	0.88	0.93	4.59	2.7	0.003	0.50	0.0	0.04	15.64	0.00	2.467	1.46	0.08	1.6	98.4	0.0	1.40	0.19	0.88	0.93	4.43	11896	1456	15	0	30	0	0	logfile
✔	8ZW0	60514	2025-06-07	2024-06-12	2.72	3.23	2.86	3.2	0.005	0.73	0.0	0.04	13.06	0.01	2.057	7.19	1.55	2.5	96.5	1.1	-0.61	0.63	0.74	2.91	3.2	0.003	0.55	0.0	0.04	15.67	0.00	2.596	5.11	3.76	2.7	97.3	0.0	1.62	1.27	0.52	0.77	3.22	8431	1064	6	0	3	0	0	logfile
✔	8ZW5	60516	2025-06-10	2024-06-12	2.09	3.21	2.22	2.8	0.004	0.83	0.0	0.06	17.37	0.00	2.202	1.98	0.71	1.7	98.3	0.0	0.53	0.90	0.89	4.93	2.9	0.003	0.59	0.0	0.05	16.22	0.00	2.480	2.93	0.95	1.3	98.7	0.0	1.19	0.42	0.87	0.93	4.21	11828	1448	15	0	30	0	0	logfile
✔	9C86	45298	2025-06-12	2024-06-12	2.9	3.44	2.99	3.3	0.004	0.59	0.0	0.04	16.83	0.00	1.947	43.20	4.30	4.8	95.2	0.1	0.38	0.64	0.73	2.64	3.3	0.005	0.86	1.0	0.04	16.93	0.00	1.287	45.40	3.90	7.1	92.9	0.0	-0.28	0.25	0.62	0.73	2.70	14540	1942	5	0	0	0	44	logfile
✔	8ZVQ	60512	2025-06-07	2024-06-11	3.4	3.70	3.47	3.7	0.005	1.03	0.0	0.05	18.07	0.01	1.532	10.98	0.63	5.5	94.5	0.0	-2.26	0.53	0.59	0.15	3.8	0.004	0.75	0.0	0.04	18.49	0.00	2.504	12.51	5.45	6.2	93.8	0.0	-0.70	1.18	0.52	0.61	0.30	8896	1152	2	0	0	0	0	logfile
✔	9FNT	50610	2025-06-05	2024-06-11	3.5	3.63	3.42	3.7	0.008	1.49	9.0	0.09	13.31	0.01	1.806	8.88	3.70	2.4	97.5	0.1	-0.87	0.67	0.87	3.70	3.7	0.003	0.59	0.0	0.04	13.75	0.00	2.344	3.70	1.68	2.4	97.6	0.0	-0.22	0.38	0.69	0.88	3.56	5535	735	8	0	2	0	0	logfile
✔	9C7U	45294	2025-06-05	2024-06-11	3.65	4.10	3.62	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.63	0.0	0.04	17.50	0.00	2.541	10.08	5.52	9.2	90.8	0.0	-0.52	0.32	0.69	0.83	2.08	6848	896	4	0	1	0	0	logfile
✔	9FoF	50621	2025-06-04	2024-06-11	2.9	2.55	2.79	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.004	0.89	0.0	0.04	17.53	0.00	2.621	2.01	1.56	7.5	92.5	0.0	-4.72	1.98	0.51	0.89	5.51	4176	600	12	0	0	0	0	logfile
✔	9FNS	50609	2025-06-05	2024-06-11	3.5	3.76	3.47	3.8	0.009	1.65	18.0	0.10	18.27	0.02	1.508	11.84	11.00	2.5	97.3	0.1	-2.07	0.66	0.84	2.34	3.8	0.002	0.57	0.0	0.04	15.50	0.00	2.457	4.07	3.05	2.8	97.1	0.1	-0.61	0.49	0.66	0.84	2.62	5542	727	8	0	2	0	0	logfile
✔	8ZVi	60511	2025-06-23	2024-06-11	3.4	3.15	3.20	3.2	0.025	2.40	175.0	0.17	18.10	0.01	2.203	23.98	21.79	7.9	90.0	2.1	-1.56	0.44	0.74	1.33	3.2	0.006	0.76	0.0	0.05	17.88	0.00	2.407	12.87	5.29	7.9	91.9	0.2	-1.28	1.57	0.48	0.84	2.08	28628	3684	14	0	0	0	0	logfile
✔	9C7T	45292	2025-06-09	2024-06-11	2.7	3.36	2.77	3.2	0.005	0.54	0.0	0.04	12.31	0.00	1.425	4.01	0.00	2.7	97.3	0.1	0.68	0.84	0.89	3.99	3.2	0.003	0.52	0.0	0.04	14.05	0.00	1.947	3.40	0.93	2.1	97.9	0.0	1.00	0.30	0.84	0.90	3.26	10659	1333	5	0	2	0	0	logfile
✔	9C77	45277	2025-06-24	2024-06-10	3.2	3.82	3.28	3.6	0.010	0.84	0.0	0.04	19.23	0.00	1.487	13.57	0.36	5.3	94.5	0.2	0.39	0.84	0.85	1.63	3.6	0.003	0.59	0.0	0.04	18.85	0.00	1.775	9.08	2.11	5.0	94.8	0.2	0.49	0.37	0.85	0.86	1.55	28792	3575	15	12	18	0	0	logfile
✔	9FND	50590	2025-06-05	2024-06-10	4.0	4.20	3.92	4.1	0.002	0.42	0.0	0.04	8.17	0.00	2.291	6.54	0.59	2.6	97.4	0.0	1.57	0.59	0.74	—	4.1	0.003	0.65	0.0	0.04	14.43	0.00	2.340	10.01	2.56	3.4	96.6	0.0	0.05	3.95	0.61	0.74	—	4914	647	2	0	0	0	0	logfile
✔	9FNE	50591	2025-06-28	2024-06-10	4.0	4.11	—	4.0	0.002	0.42	0.0	0.04	11.44	0.00	2.145	5.11	0.99	2.5	97.5	0.0	1.56	0.64	0.76	—	4.0	0.003	0.55	0.0	0.04	15.21	0.00	2.368	5.13	1.96	3.4	96.6	0.0	0.72	0.62	0.76	0.84	—	32706	3990	12	86	3	0	0	logfile
✔	9FNB	50587	2025-06-05	2024-06-10	2.64	2.64	2.35	2.6	0.009	1.41	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.006	0.72	0.0	0.05	15.91	0.00	2.501	5.49	0.79	6.6	93.4	0.0	-2.36	0.87	0.50	0.92	6.41	4568	540	8	0	16	0	0	logfile
✔	9FNP	50601	2025-06-18	2024-06-10	2.2	2.73	2.21	2.6	0.006	0.89	0.0	0.06	11.82	0.01	2.273	1.73	1.19	1.8	98.2	0.0	0.59	0.76	0.90	6.53	2.6	0.002	0.53	0.0	0.04	13.90	0.00	2.538	1.64	0.77	1.6	98.4	0.0	1.35	0.49	0.78	0.91	6.12	21966	2793	7	0	0	0	0	logfile
✔	9FNQ	50602	2025-06-19	2024-06-10	2.1	2.28	2.18	2.3	0.003	0.56	0.0	0.05	10.08	0.00	2.273	2.18	1.16	1.0	99.0	0.0	0.92	0.49	0.76	5.55	2.3	0.003	0.60	0.0	0.05	14.30	0.00	2.612	1.25	1.66	2.5	97.5	0.0	0.95	0.41	0.64	0.86	5.54	22589	2870	7	0	0	0	0	logfile
✔	8ZUF	60483	2025-06-05	2024-06-09	3.31	3.54	3.33	3.6	0.012	1.37	0.0	0.09	13.43	0.01	2.400	1.80	0.24	1.2	98.5	0.3	0.21	0.67	0.73	3.59	3.6	0.003	0.58	0.0	0.04	12.67	0.00	2.549	7.58	1.19	1.2	98.8	0.0	2.03	1.08	0.61	0.72	2.46	5745	770	10	0	19	0	0	logfile

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