Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FJo	50507	2025-06-10	2024-05-31	3.05	3.39	3.10	3.4	0.002	0.52	0.0	0.04	15.85	0.00	2.165	5.36	0.24	2.1	97.9	0.0	-0.37	0.68	0.84	2.73	3.4	0.003	0.58	0.0	0.04	16.45	0.00	2.450	5.49	1.71	2.8	97.2	0.0	0.91	0.29	0.67	0.83	2.41	11466	1452	8	0	8	0	0	logfile
✔	8ZPZ	60369	2025-06-08	2024-05-31	3.5	3.77	3.54	3.8	0.003	0.77	0.0	0.04	14.10	0.01	2.123	9.26	0.31	7.5	92.5	0.0	-3.25	0.63	0.81	1.58	3.8	0.003	0.66	0.0	0.04	15.20	0.00	2.515	6.64	2.30	5.9	94.1	0.0	-1.59	0.52	0.62	0.78	0.92	9103	1179	2	0	1	0	0	logfile
✔	8ZPS	60353	2025-06-07	2024-05-31	2.97	2.45	2.76	3.0	0.003	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.010	0.65	0.0	0.04	15.00	0.00	2.338	7.33	2.66	3.6	96.4	0.0	0.81	1.41	0.63	0.79	2.40	8848	1135	7	0	1	0	0	logfile
✔	8ZPT	60354	2025-06-07	2024-05-31	2.96	2.53	2.84	3.0	0.002	0.45	0.0	0.04	10.05	0.00	1.974	6.41	0.20	2.2	97.8	0.0	1.57	0.57	0.73	2.45	3.0	0.006	0.68	0.0	0.04	15.46	0.00	2.481	5.92	3.03	3.2	96.8	0.0	0.48	1.78	0.60	0.79	2.87	9151	1162	7	0	1	0	0	logfile
✔	9C3E	45166	2025-06-09	2024-05-31	3.5	4.21	3.49	3.9	0.005	0.96	0.0	0.05	15.76	0.01	2.140	16.01	1.92	4.2	95.7	0.2	-0.18	0.74	0.79	2.36	3.9	0.004	0.73	0.0	0.05	16.03	0.00	2.448	10.51	4.20	4.8	95.1	0.1	0.37	0.54	0.74	0.80	2.07	10619	1356	15	0	13	0	0	logfile
✔	8ZPV	60355	2025-06-11	2024-05-31	2.9	3.96	3.05	3.6	0.007	0.89	4.0	0.05	17.50	0.00	2.026	14.13	10.22	8.2	91.7	0.1	-2.61	0.81	0.73	0.57	3.6	0.004	0.91	0.0	0.05	17.60	0.00	2.295	11.69	3.15	7.0	92.9	0.1	-0.07	1.77	0.86	0.85	1.69	12440	1552	6	0	2	0	0	logfile
✔	9FJP	50508	2025-06-21	2024-05-31	3.2	3.58	3.26	3.4	0.002	0.49	0.0	0.04	11.31	0.00	1.915	2.80	0.74	2.8	97.2	0.0	0.82	0.81	0.84	2.59	3.4	0.004	0.73	1.0	0.04	14.88	0.00	2.256	5.63	2.32	2.4	97.6	0.0	0.74	1.11	0.82	0.87	2.06	25376	3228	8	10	3	0	0	logfile
✔	9FJK	50503	2025-06-23	2024-05-31	2.84	3.04	2.94	3.1	0.005	0.90	0.0	0.06	11.57	0.01	1.056	5.24	0.30	4.6	95.4	0.0	-1.55	0.54	0.72	3.04	3.1	0.006	0.70	0.0	0.05	14.53	0.00	2.464	8.05	1.58	5.4	94.6	0.0	-0.76	0.93	0.59	0.83	3.02	26529	3382	5	0	0	0	0	logfile
✔	9FJY	50517	2025-06-14	2024-05-31	3.79	4.12	3.87	4.0	0.004	0.66	0.0	0.04	18.47	0.00	1.723	9.49	0.41	1.7	98.3	0.0	0.26	0.82	0.83	2.23	4.0	0.003	0.70	0.0	0.05	16.83	0.00	2.012	9.02	3.70	2.1	97.9	0.0	0.24	0.97	0.82	0.83	1.78	15968	2010	22	0	24	0	0	logfile
✔	8ZPX	60366	2025-06-08	2024-05-31	3.5	3.77	3.55	3.8	0.005	0.82	0.0	0.05	13.74	0.01	1.929	9.25	0.00	8.8	91.2	0.0	-4.46	0.64	0.80	2.00	3.8	0.003	0.65	0.0	0.04	15.37	0.00	2.402	5.42	2.71	7.2	92.8	0.0	-2.79	0.36	0.60	0.78	1.35	9065	1178	1	0	0	0	0	logfile
✔	9C3B	45164	2025-06-04	2024-05-31	3.4	3.72	3.45	3.6	0.007	0.88	0.0	0.05	16.52	0.02	2.213	9.76	3.24	8.2	90.2	1.5	-0.94	0.32	0.77	0.80	3.6	0.003	0.64	0.0	0.04	16.35	0.01	2.500	6.94	2.55	5.8	93.5	0.7	-0.52	1.00	0.33	0.90	3.19	4329	588	2	0	0	0	0	logfile
✔	8ZPP	60351	2025-06-04	2024-05-30	3.6	3.76	3.27	3.7	0.008	0.75	0.0	0.05	12.66	0.00	2.241	12.88	0.00	4.1	95.9	0.0	-0.26	0.64	0.77	2.55	3.7	0.004	0.70	0.0	0.05	16.42	0.00	2.483	10.68	4.27	3.9	96.1	0.0	-0.61	1.17	0.65	0.78	2.07	3266	419	3	0	0	0	0	logfile
✔	9C2A	45152	2025-06-06	2024-05-30	2.74	2.08	2.73	1.9	0.008	0.95	0.0	0.06	12.74	0.01	2.207	6.15	0.00	2.6	97.4	0.0	-1.18	0.75	0.77	4.66	1.9	0.003	0.52	0.0	0.04	14.49	0.00	2.519	4.27	2.65	2.4	97.6	0.0	0.59	0.43	0.78	0.81	4.33	7833	933	12	0	21	102	0	logfile
✔	9C2B	45153	2025-06-06	2024-05-30	2.42	2.65	2.43	2.7	0.007	0.99	0.0	0.06	18.26	0.01	2.161	3.71	0.00	2.1	97.9	0.0	0.27	0.67	0.85	4.42	2.7	0.004	0.62	0.0	0.05	16.94	0.00	1.902	3.14	2.17	1.3	98.7	0.0	1.36	0.32	0.69	0.87	4.03	8208	990	15	0	24	141	0	logfile
✔	9C28	45137	2025-06-23	2024-05-30	3.12	3.57	3.15	3.5	0.002	0.48	0.0	0.04	15.32	0.00	2.254	9.23	0.04	2.6	97.4	0.0	1.00	0.78	0.84	3.81	3.5	0.005	0.60	0.0	0.04	15.59	0.00	2.189	6.94	1.84	3.0	97.0	0.0	0.64	0.28	0.78	0.85	3.85	28010	3680	20	0	20	0	0	logfile
✔	9C21	45135	2025-06-14	2024-05-30	3.4	4.07	3.70	4.0	0.005	0.71	6.0	0.05	15.19	0.01	2.183	12.52	1.42	4.3	95.7	0.0	0.80	0.73	0.83	1.64	3.9	0.003	0.58	0.0	0.04	15.27	0.00	2.522	9.13	3.37	2.9	97.1	0.0	1.34	1.47	0.67	0.80	1.49	16704	2226	6	0	0	0	0	logfile
✔	8ZPK	60347	2025-06-19	2024-05-30	3.21	4.38	3.28	3.6	0.003	0.54	0.0	0.04	16.78	0.00	1.942	4.35	0.00	4.1	95.9	0.0	0.30	0.91	0.88	2.42	3.6	0.003	0.50	0.0	0.04	17.51	0.00	1.930	4.12	0.74	4.1	95.9	0.0	1.36	0.35	0.92	0.89	2.18	22033	2494	11	78	6	0	0	logfile
✔	8ZPN	60350	2025-06-04	2024-05-30	3.31	3.36	3.31	3.6	0.003	0.60	0.0	0.04	20.02	0.00	2.323	7.70	0.00	4.1	95.9	0.0	0.32	0.57	0.80	1.02	3.6	0.003	0.60	0.0	0.04	17.35	0.00	2.563	6.13	2.44	4.6	95.4	0.0	0.57	0.90	0.56	0.81	0.89	3204	398	3	0	2	0	0	logfile
✔	9C1i	45120	2025-06-11	2024-05-29	3.52	3.90	3.60	3.9	0.004	0.55	0.0	0.04	13.70	0.00	2.068	6.93	0.14	6.6	93.4	0.0	-1.88	0.55	0.74	2.53	3.9	0.004	0.60	0.0	0.04	16.21	0.00	2.259	9.03	3.53	9.4	90.6	0.0	-2.30	0.79	0.56	0.76	2.56	12996	840	2	0	0	0	6348	logfile
✔	8ZP4	60326	2025-06-17	2024-05-29	3.33	4.24	3.45	3.8	0.004	0.60	0.0	0.04	17.01	0.00	2.203	8.98	0.00	3.6	96.4	0.0	0.40	0.87	0.82	1.74	3.8	0.003	0.56	0.0	0.04	18.07	0.00	1.892	7.99	1.00	3.3	96.7	0.0	1.08	0.45	0.88	0.86	1.63	20029	2286	10	62	6	0	0	logfile

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