Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZPB	60331	2025-06-09	2024-05-29	2.6	2.83	2.61	2.8	0.005	0.56	0.0	0.04	15.80	0.00	1.921	6.01	1.08	1.7	98.3	0.0	0.89	0.61	0.80	4.62	2.8	0.004	0.53	0.0	0.04	15.62	0.00	2.033	4.13	1.79	1.7	98.3	0.0	1.42	1.35	0.59	0.79	4.78	10676	667	4	0	5	54	5257	logfile
✔	8ZP7	60328	2025-06-23	2024-05-29	3.0	3.01	3.08	1.4	0.005	0.98	0.0	0.05	20.13	0.01	2.212	8.64	3.92	7.3	92.5	0.2	-1.77	0.92	0.85	2.29	1.4	0.004	0.81	0.0	0.04	19.78	0.01	2.288	12.00	2.61	7.8	92.0	0.2	-0.65	0.36	0.92	0.85	2.15	27540	3303	14	92	2	0	0	logfile
✔	9C1U	45130	2025-06-04	2024-05-29	2.31	2.35	2.46	2.4	0.004	0.47	0.0	0.05	10.27	0.00	2.112	2.84	0.00	0.3	99.7	0.0	0.19	0.71	0.87	6.57	2.4	0.004	0.59	0.0	0.05	14.80	0.00	2.595	8.31	3.85	0.0	100.0	0.0	0.25	0.42	0.68	0.89	6.41	2376	312	12	0	0	0	0	logfile
✔	8ZP4	60326	2025-06-17	2024-05-29	3.33	4.24	3.45	3.8	0.004	0.60	0.0	0.04	17.01	0.00	2.203	8.98	0.00	3.6	96.4	0.0	0.40	0.87	0.82	1.74	3.8	0.003	0.56	0.0	0.04	18.07	0.00	1.892	7.99	1.00	3.3	96.7	0.0	1.08	0.45	0.88	0.86	1.63	20029	2286	10	62	6	0	0	logfile
✔	8ZP5	60327	2025-06-18	2024-05-29	2.98	3.64	3.07	3.4	0.003	0.50	0.0	0.04	16.12	0.00	2.014	7.73	0.04	2.5	97.5	0.0	0.63	0.88	0.86	3.26	3.4	0.004	0.54	0.0	0.04	17.57	0.00	1.917	6.41	1.02	2.4	97.6	0.0	1.38	0.43	0.86	0.86	3.10	21482	2446	11	69	6	0	0	logfile
✔	8ZNZ	60281	2025-06-13	2024-05-28	3.06	3.32	3.07	3.3	0.010	1.04	6.0	0.08	16.23	0.03	2.033	17.99	0.97	10.2	89.8	0.0	-3.29	0.74	0.84	3.55	3.4	0.004	0.70	0.0	0.05	16.64	0.00	1.966	4.40	2.74	8.2	91.8	0.0	-1.36	1.27	0.72	0.86	3.18	15154	1944	12	0	8	0	0	logfile
✔	8ZoL	60297	2025-06-17	2024-05-28	2.55	2.26	2.63	1.8	0.005	0.71	0.0	0.05	19.60	0.00	1.968	10.10	1.64	8.3	91.2	0.5	-0.67	0.72	0.67	1.91	2.0	0.003	0.66	0.0	0.04	19.56	0.00	2.433	7.50	2.81	7.3	92.5	0.2	-0.47	0.54	0.75	0.72	1.85	19451	2377	9	59	0	0	0	logfile
✔	8ZNR	60279	2025-06-19	2024-05-28	2.9	2.29	2.94	2.0	0.007	1.17	0.0	0.07	18.22	0.01	2.197	6.59	1.40	6.6	93.0	0.4	-3.03	0.80	0.82	3.32	2.1	0.006	0.70	0.0	0.05	19.09	0.00	2.482	7.82	3.47	5.8	94.2	0.1	-0.94	0.95	0.81	0.83	3.12	22605	2607	11	91	0	0	0	logfile
✔	8ZNJ	60273	2025-06-11	2024-05-27	3.0	3.17	3.05	3.1	0.003	0.59	0.0	0.04	19.15	0.00	1.861	7.47	1.75	10.0	90.0	0.0	-1.72	0.70	0.76	2.68	3.1	0.005	0.64	0.0	0.05	19.35	0.00	1.817	8.57	2.38	11.3	88.7	0.0	-1.75	0.37	0.71	0.77	2.59	12699	681	5	43	1	0	6190	logfile
✔	9FHB	50444	2025-06-05	2024-05-27	3.87	4.06	3.87	4.0	0.005	0.99	0.0	0.05	15.86	0.01	2.140	16.76	3.25	4.1	95.1	0.8	-0.41	0.70	0.77	1.38	4.0	0.003	0.70	0.0	0.04	16.71	0.00	1.994	8.76	3.25	4.0	95.9	0.1	1.01	1.18	0.71	0.79	0.91	6751	862	8	0	7	0	0	logfile
✔	8ZNi	60272	2025-06-04	2024-05-27	3.29	4.18	3.32	3.9	0.015	1.65	0.0	0.21	14.83	0.00	1.220	19.67	0.00	10.4	89.6	0.0	-3.51	0.76	0.59	-0.17	3.9	0.003	0.80	0.0	0.05	15.29	0.00	2.563	11.83	6.34	13.9	86.1	0.0	-3.50	3.18	0.79	0.66	0.44	3585	496	3	0	6	0	0	logfile
✔	8ZND	60268	2025-06-04	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.50	0.0	0.04	17.09	0.00	2.439	3.94	1.18	1.4	98.6	0.0	1.46	0.83	0.53	0.92	4.32	3334	416	2	0	1	24	0	logfile
✔	8ZNC	60267	2025-06-04	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.002	0.54	0.0	0.04	19.17	0.00	2.450	5.87	1.47	1.2	98.8	0.0	1.36	1.18	0.50	0.90	4.06	3356	416	2	0	3	24	0	logfile
✔	8ZNE	60269	2025-06-04	2024-05-26	2.64	2.76	2.43	2.7	0.005	0.78	0.0	0.05	16.82	0.01	2.472	6.22	2.65	3.1	96.9	0.0	0.47	0.53	0.87	4.39	2.7	0.003	0.53	0.0	0.04	17.93	0.00	2.480	5.46	1.18	3.9	96.1	0.0	1.19	1.31	0.49	0.90	4.36	3312	417	2	0	1	9	0	logfile
✔	8ZNB	60266	2025-06-04	2024-05-26	2.53	2.68	2.17	2.7	0.007	0.95	0.0	0.05	15.55	0.00	2.421	7.24	2.06	1.2	98.8	0.0	0.61	0.55	0.89	4.44	2.7	0.003	0.58	0.0	0.04	17.05	0.00	2.438	6.19	0.88	1.7	98.3	0.0	1.06	0.91	0.51	0.91	4.02	3342	416	2	0	1	21	0	logfile
✔	8ZNG	60270	2025-06-04	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.53	0.0	0.04	17.81	0.00	2.488	5.27	2.06	2.2	97.8	0.0	1.21	0.81	0.55	0.92	4.06	3347	416	2	0	2	16	0	logfile
✔	9FH0	50435	2025-06-04	2024-05-26	2.9	3.24	2.81	3.1	0.013	0.83	0.0	0.06	13.67	0.00	2.121	7.22	0.00	6.1	93.9	0.0	-3.02	0.52	0.90	4.26	3.1	0.003	0.55	0.0	0.04	16.23	0.00	2.601	4.52	0.66	3.5	96.5	0.0	1.24	0.39	0.52	0.90	3.47	4503	585	2	0	0	0	0	logfile
✔	9FGZ	50434	2025-06-11	2024-05-26	2.7	2.77	2.55	2.8	0.003	0.51	0.0	0.04	12.42	0.00	2.125	2.44	0.00	1.0	99.0	0.0	-1.97	0.75	0.90	4.62	2.8	0.003	0.50	0.0	0.04	15.02	0.00	2.564	2.73	1.28	2.4	97.6	0.0	0.69	0.89	0.72	0.90	3.99	12317	1567	6	0	0	0	0	logfile
✔	9C0H	45084	2025-06-11	2024-05-25	2.5	2.79	2.56	2.7	0.005	0.72	2.0	0.04	16.94	0.01	2.157	8.71	4.07	6.2	93.8	0.0	0.47	0.74	0.86	3.10	2.7	0.003	0.63	2.0	0.04	16.34	0.00	2.285	6.63	2.66	5.3	94.7	0.0	1.15	0.25	0.72	0.85	3.05	13126	1752	4	0	8	0	0	logfile
✔	9C0J	45086	2025-06-05	2024-05-25	3.17	2.92	3.10	3.2	0.005	1.02	0.0	0.05	22.01	0.01	2.099	0.65	0.80	1.2	98.8	0.0	-0.50	0.69	0.87	5.25	3.2	0.006	0.71	0.0	0.04	22.08	0.01	1.966	2.84	3.22	2.4	97.6	0.0	0.62	0.39	0.70	0.89	4.73	7010	425	5	164	3	0	0	logfile

• ← previous
• Page 57 of 700
• next →