Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C0i	45085	2025-06-06	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	2.8	0.002	0.45	0.0	0.03	20.87	0.00	2.039	4.28	0.80	1.7	98.3	0.0	1.99	0.44	0.68	0.89	3.59	7676	425	5	197	2	0	0	logfile
✔	9C0H	45084	2025-06-11	2024-05-25	2.5	2.79	2.56	2.7	0.005	0.72	2.0	0.04	16.94	0.01	2.157	8.71	4.07	6.2	93.8	0.0	0.47	0.74	0.86	3.10	2.7	0.003	0.63	2.0	0.04	16.34	0.00	2.285	6.63	2.66	5.3	94.7	0.0	1.15	0.25	0.72	0.85	3.05	13126	1752	4	0	8	0	0	logfile
✔	9C0J	45086	2025-06-05	2024-05-25	3.17	2.92	3.10	3.2	0.005	1.02	0.0	0.05	22.01	0.01	2.099	0.65	0.80	1.2	98.8	0.0	-0.50	0.69	0.87	5.25	3.2	0.006	0.71	0.0	0.04	22.08	0.01	1.966	2.84	3.22	2.4	97.6	0.0	0.62	0.39	0.70	0.89	4.73	7010	425	5	164	3	0	0	logfile
✔	9C0F	45082	2025-06-08	2024-05-25	3.6	4.55	3.56	3.5	0.028	1.94	5.0	0.11	16.99	0.01	2.314	1.58	0.34	2.2	97.7	0.1	-0.53	0.82	0.70	1.47	3.6	0.003	0.74	0.0	0.04	18.69	0.00	2.504	9.46	1.01	4.6	95.3	0.1	0.20	0.83	0.86	0.78	0.85	9507	970	6	70	4	0	0	logfile
✔	9FGU	50428	2025-06-04	2024-05-25	4.3	4.49	4.26	4.3	0.003	0.73	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.004	0.77	0.0	0.05	13.70	0.00	2.544	15.72	0.00	6.6	93.4	0.0	-1.49	1.06	0.76	0.72	—	3241	413	3	0	1	0	0	logfile
✔	9FGS	50420	2025-06-04	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.67	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.004	0.70	0.0	0.04	15.52	0.00	2.414	10.73	3.80	8.4	91.3	0.2	-1.81	0.96	0.79	0.81	—	3187	412	3	0	1	0	0	logfile
✔	9C0E	45081	2025-06-12	2024-05-25	2.7	2.93	2.75	2.8	0.009	0.65	0.0	0.04	16.85	0.00	1.803	21.11	4.51	4.4	95.6	0.0	2.11	0.73	0.90	3.32	2.9	0.003	0.59	0.0	0.04	16.74	0.00	2.083	5.91	2.80	4.3	95.7	0.0	1.53	0.86	0.72	0.90	3.42	13538	1818	4	0	12	0	0	logfile
✔	8ZMY	60262	2025-06-07	2024-05-24	2.9	2.88	2.75	3.0	0.010	0.91	0.0	0.05	15.08	0.00	2.203	20.23	0.00	4.2	95.8	0.0	-4.52	0.51	0.79	2.59	2.9	0.007	0.93	0.0	0.05	17.99	0.00	2.530	6.63	4.90	7.0	93.0	0.0	-2.97	2.47	0.59	0.91	3.91	8652	1176	19	0	27	0	0	logfile
✔	9BZS	45074	2025-06-04	2024-05-24	3.14	3.20	1.72	3.4	0.003	0.76	0.0	0.06	10.69	0.00	2.313	7.93	0.00	4.5	95.5	0.0	-2.40	0.52	0.86	5.38	3.4	0.003	0.59	0.0	0.05	13.78	0.00	2.524	4.31	1.79	6.1	93.9	0.0	-2.40	0.36	0.51	0.86	5.32	3595	460	5	0	0	0	0	logfile
✔	9BZ7	45055	2025-06-15	2024-05-24	2.9	3.39	2.96	3.3	0.002	0.54	0.0	0.04	15.79	0.00	2.159	8.39	1.79	4.1	95.9	0.0	1.78	0.73	0.86	1.96	3.3	0.004	0.68	0.0	0.04	16.16	0.00	2.488	6.65	2.68	5.0	95.0	0.0	1.98	1.14	0.73	0.86	1.92	16961	2086	7	0	0	0	0	logfile
✔	9BZ8	45056	2025-06-16	2024-05-24	3.0	3.43	2.93	3.3	0.002	0.53	0.0	0.04	16.19	0.00	2.249	7.04	2.73	2.2	97.8	0.0	2.18	0.77	0.85	2.21	3.3	0.003	0.69	0.0	0.04	17.07	0.00	2.579	6.10	3.51	1.4	98.6	0.0	2.34	0.59	0.73	0.84	2.15	18277	2254	7	0	0	0	0	logfile
✔	9BYY	45048	2025-06-14	2024-05-24	4.07	3.91	3.42	3.6	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.19	1.34	1.6	98.4	0.0	0.56	0.68	0.64	—	3.7	0.004	0.72	0.0	0.04	15.13	0.00	1.924	13.65	0.00	2.9	97.1	0.0	0.62	3.96	0.70	0.76	—	16038	1944	8	2	10	0	0	logfile
✔	9C07	45075	2025-06-05	2024-05-24	2.73	3.55	2.71	3.3	0.004	0.58	0.0	0.04	12.73	0.01	2.267	6.41	0.23	4.1	95.9	0.0	4.88	0.75	0.89	5.06	3.3	0.003	0.57	0.0	0.03	13.68	0.00	2.526	1.50	0.23	4.7	95.3	0.0	5.00	1.92	0.60	0.81	4.47	4512	524	4	0	36	0	0	logfile
✔	9BZK	45070	2025-06-14	2024-05-24	4.19	4.32	3.68	4.0	0.006	0.74	3.0	0.06	17.95	0.00	1.912	7.93	1.40	1.6	98.4	0.0	0.56	0.67	0.61	—	4.1	0.004	0.74	0.0	0.04	15.17	0.00	1.800	14.51	0.06	2.7	97.3	0.0	0.55	2.53	0.70	0.76	—	16038	1944	8	2	10	0	0	logfile
✔	9BZ6	45054	2025-06-14	2024-05-24	3.87	4.18	3.45	3.9	0.006	0.74	3.0	0.06	17.91	0.00	1.912	8.25	1.34	1.6	98.4	0.0	0.56	0.71	0.68	2.07	3.9	0.004	0.96	0.0	0.05	18.77	0.00	1.891	20.01	2.91	2.9	97.1	0.0	-0.03	2.55	0.71	0.80	1.70	16038	1944	8	2	10	0	0	logfile
✔	9BZ9	45057	2025-06-14	2024-05-24	4.64	4.55	3.96	4.2	0.006	0.75	3.0	0.06	17.94	0.00	1.912	8.25	1.40	1.7	98.3	0.0	0.55	0.68	0.58	—	4.2	0.003	0.71	0.0	0.04	15.29	0.00	1.918	16.72	0.00	2.0	98.0	0.0	0.53	2.76	0.73	0.74	—	16038	1944	8	2	10	0	0	logfile
✔	9BYZ	45049	2025-06-14	2024-05-24	3.94	3.85	3.38	3.7	0.006	0.74	3.0	0.06	17.91	0.00	1.912	8.28	1.40	1.6	98.4	0.0	0.55	0.69	0.67	1.63	3.7	0.004	0.77	0.0	0.05	18.42	0.00	1.904	15.62	2.56	2.4	97.6	0.0	0.65	3.23	0.72	0.78	1.87	16038	1944	8	2	10	0	0	logfile
✔	9BZD	45064	2025-06-14	2024-05-24	3.82	4.16	3.48	3.9	0.006	0.74	3.0	0.06	17.95	0.00	1.911	8.22	1.34	1.6	98.4	0.0	0.57	0.70	0.67	2.23	3.9	0.004	0.90	0.0	0.05	18.44	0.00	1.888	18.37	3.38	2.2	97.8	0.0	0.43	3.55	0.71	0.79	1.91	16038	1944	8	2	10	0	0	logfile
✔	9BYW	45046	2025-06-14	2024-05-24	4.64	4.07	3.78	3.9	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.06	1.34	1.6	98.4	0.0	0.55	0.66	0.56	—	3.9	0.003	0.69	0.0	0.04	15.29	0.00	1.967	14.35	0.00	2.5	97.5	0.0	0.64	2.71	0.71	0.71	—	16038	1944	8	2	10	0	0	logfile
✔	9BZ3	45052	2025-06-14	2024-05-24	4.01	3.84	3.38	3.6	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.06	1.34	1.6	98.4	0.0	0.56	0.67	0.64	—	3.7	0.003	0.67	0.0	0.04	15.27	0.00	1.948	11.47	0.00	2.4	97.6	0.0	1.15	2.46	0.70	0.76	—	16038	1944	8	2	10	0	0	logfile

• ← previous
• Page 58 of 700
• next →