Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BYZ	45049	2025-06-14	2024-05-24	3.94	3.85	3.38	3.7	0.006	0.74	3.0	0.06	17.91	0.00	1.912	8.28	1.40	1.6	98.4	0.0	0.55	0.69	0.67	1.63	3.7	0.004	0.77	0.0	0.05	18.42	0.00	1.904	15.62	2.56	2.4	97.6	0.0	0.65	3.23	0.72	0.78	1.87	16038	1944	8	2	10	0	0	logfile
✔	9BZ9	45057	2025-06-14	2024-05-24	4.64	4.55	3.96	4.2	0.006	0.75	3.0	0.06	17.94	0.00	1.912	8.25	1.40	1.7	98.3	0.0	0.55	0.68	0.58	—	4.2	0.003	0.71	0.0	0.04	15.29	0.00	1.918	16.72	0.00	2.0	98.0	0.0	0.53	2.76	0.73	0.74	—	16038	1944	8	2	10	0	0	logfile
✔	9BZo	45072	2025-06-14	2024-05-24	4.48	4.45	3.89	4.2	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.00	1.34	1.6	98.4	0.0	0.56	0.67	0.59	—	4.2	0.005	0.78	0.0	0.05	15.18	0.00	1.803	19.94	0.00	2.7	97.3	0.0	0.23	3.46	0.72	0.76	—	16038	1944	8	2	10	0	0	logfile
✔	9BZE	45065	2025-06-14	2024-05-24	4.19	4.31	3.65	4.0	0.006	0.74	3.0	0.06	17.91	0.00	1.911	8.44	1.34	1.6	98.4	0.0	0.56	0.70	0.65	—	4.1	0.003	0.69	0.0	0.04	15.28	0.00	1.872	13.37	0.00	2.2	97.8	0.0	0.80	1.52	0.71	0.78	—	16038	1944	8	2	10	0	0	logfile
✔	9BZK	45070	2025-06-14	2024-05-24	4.19	4.32	3.68	4.0	0.006	0.74	3.0	0.06	17.95	0.00	1.912	7.93	1.40	1.6	98.4	0.0	0.56	0.67	0.61	—	4.1	0.004	0.74	0.0	0.04	15.17	0.00	1.800	14.51	0.06	2.7	97.3	0.0	0.55	2.53	0.70	0.76	—	16038	1944	8	2	10	0	0	logfile
✔	9BZA	45061	2025-06-14	2024-05-24	3.93	4.20	3.52	3.9	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.31	1.40	1.6	98.4	0.0	0.55	0.68	0.65	1.69	4.0	0.004	0.87	0.0	0.05	18.79	0.00	1.886	18.52	3.90	2.9	97.1	0.0	0.28	2.34	0.70	0.78	1.61	16038	1944	8	2	10	0	0	logfile
✔	9BZJ	45069	2025-06-14	2024-05-24	4.12	4.28	3.66	4.0	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.28	1.34	1.6	98.4	0.0	0.55	0.68	0.63	—	4.0	0.003	0.70	0.0	0.04	15.14	0.00	1.925	14.89	0.00	2.2	97.8	0.0	0.72	2.54	0.70	0.77	—	16038	1944	8	2	10	0	0	logfile
✔	9BYT	45044	2025-06-14	2024-05-24	3.52	3.70	3.11	3.4	0.006	0.74	3.0	0.06	17.93	0.00	1.911	8.22	1.28	1.6	98.4	0.0	0.56	0.71	0.71	2.51	3.5	0.004	0.77	0.0	0.05	18.24	0.00	1.930	14.28	3.15	2.2	97.8	0.0	0.88	2.47	0.69	0.80	2.31	16038	1944	8	2	10	0	0	logfile
✔	9BZi	45068	2025-06-14	2024-05-24	3.99	4.27	3.61	4.0	0.006	0.74	3.0	0.06	17.91	0.00	1.912	8.19	1.34	1.6	98.4	0.0	0.57	0.70	0.65	1.19	4.0	0.005	0.96	0.0	0.05	18.73	0.00	1.792	25.54	3.21	2.4	97.6	0.0	0.18	3.11	0.72	0.79	1.54	16038	1944	8	2	10	0	0	logfile
✔	9BZF	45066	2025-06-14	2024-05-24	4.4	4.50	3.87	4.2	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.15	1.34	1.6	98.4	0.0	0.56	0.66	0.58	—	4.2	0.003	0.72	0.0	0.04	15.10	0.00	1.944	14.86	0.00	2.4	97.6	0.0	0.70	2.32	0.71	0.75	—	16038	1944	8	2	10	0	0	logfile
✔	9BZ5	45053	2025-06-14	2024-05-24	3.93	4.22	3.53	3.9	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.34	1.46	1.6	98.4	0.0	0.57	0.68	0.64	1.50	4.0	0.004	0.88	0.0	0.05	18.78	0.00	1.890	17.13	2.97	2.2	97.8	0.0	0.48	2.08	0.70	0.78	1.72	16038	1944	8	2	10	0	0	logfile
✔	9BYV	45045	2025-06-14	2024-05-24	3.83	3.80	3.29	3.5	0.006	0.74	3.0	0.06	17.95	0.00	1.911	8.12	1.40	1.6	98.4	0.0	0.55	0.68	0.67	2.22	3.6	0.004	0.78	0.0	0.05	18.51	0.00	1.937	15.33	3.03	2.4	97.6	0.0	0.79	2.27	0.68	0.78	2.28	16038	1944	8	2	10	0	0	logfile
✔	9BZM	45071	2025-06-14	2024-05-24	4.19	4.30	3.64	4.0	0.006	0.74	3.0	0.06	17.95	0.00	1.912	8.19	1.28	1.6	98.4	0.0	0.56	0.68	0.63	—	4.0	0.003	0.72	0.0	0.04	14.93	0.00	1.863	13.40	0.00	2.2	97.8	0.0	0.44	1.82	0.70	0.76	—	16038	1944	8	2	10	0	0	logfile
✘	9BYD	45029	2025-06-14	2024-05-23	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✘	9BY8	45021	2025-06-14	2024-05-23	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✔	9BYH	45031	2025-06-10	2024-05-23	2.53	2.70	2.54	2.7	0.002	0.50	0.0	0.04	18.81	0.00	2.047	9.86	0.89	1.9	98.1	0.0	0.89	0.72	0.84	4.29	2.7	0.003	0.55	0.0	0.04	18.91	0.00	2.059	8.72	2.03	1.7	98.3	0.0	0.84	0.22	0.69	0.83	4.29	11524	1394	6	2	6	0	0	logfile
✔	9BXX	45014	2025-06-14	2024-05-23	4.26	4.20	3.71	3.9	0.008	0.83	3.0	0.06	17.54	0.00	1.912	9.87	1.40	2.1	97.9	0.0	0.57	0.64	0.56	—	3.9	0.004	0.76	0.0	0.05	14.69	0.00	1.790	17.29	0.00	3.1	96.9	0.0	0.41	2.32	0.68	0.72	—	16678	2026	9	2	10	0	0	logfile
✔	8ZMP	60253	2025-06-22	2024-05-23	3.38	3.65	3.40	3.6	0.005	0.74	3.0	0.05	16.90	0.00	2.236	7.35	5.41	4.7	95.3	0.0	-1.31	0.79	0.86	2.22	3.6	0.003	0.65	0.0	0.05	15.19	0.00	2.471	4.50	4.37	3.3	96.7	0.0	-0.57	0.31	0.79	0.86	2.40	26175	3198	33	0	90	0	0	logfile
✘	9BY7	45020	2025-06-14	2024-05-23	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✔	9BYL	45037	2025-06-14	2024-05-23	2.99	3.48	2.72	3.2	0.008	0.81	3.0	0.06	17.69	0.00	1.912	7.88	1.45	1.7	98.3	0.0	0.59	0.71	0.71	3.47	3.2	0.004	0.69	0.0	0.04	17.91	0.00	1.959	9.67	2.18	2.1	97.9	0.0	1.38	2.38	0.67	0.82	2.92	16706	2030	9	2	10	0	0	logfile

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