Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BY0	45016	2025-06-14	2024-05-23	4.19	4.15	3.60	3.9	0.008	0.84	4.0	0.06	17.53	0.00	1.912	10.11	1.40	2.1	97.9	0.0	0.56	0.67	0.62	—	3.9	0.006	0.80	0.0	0.05	14.73	0.00	1.750	19.65	0.00	3.2	96.8	0.0	0.45	2.54	0.71	0.76	—	16678	2026	9	2	10	0	0	logfile
✘	9BY8	45021	2025-06-14	2024-05-23	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✘	9BYC	45026	2025-06-14	2024-05-23	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✘	8ZMS	60255	2025-06-04	2024-05-23	3.7	3.97	3.82	4.0	0.007	1.15	0.0	0.05	9.68	0.01	2.349	3.51	0.00	5.0	95.0	0.0	-3.71	0.44	0.76	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2920	386	2	0	1	0	0	logfile
✔	8ZMK	60250	2025-06-08	2024-05-23	3.85	6.58	3.91	7.3	0.002	0.42	0.0	0.03	18.72	0.00	2.215	6.89	2.27	10.4	89.0	0.6	-2.54	0.70	0.33	-0.27	7.3	0.004	0.95	1.0	0.04	20.31	0.00	2.117	18.74	2.27	5.9	94.1	0.0	-0.59	1.91	0.80	0.69	-0.78	9204	698	3	169	0	0	0	logfile
✘	9BYA	45024	2025-06-14	2024-05-23	4.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✔	8ZMi	60248	2025-06-08	2024-05-23	3.49	4.85	3.63	3.9	0.003	0.62	0.0	0.04	22.15	0.01	2.146	14.45	0.16	2.6	97.1	0.3	0.35	0.84	0.62	1.26	3.9	0.003	0.61	0.0	0.03	22.51	0.00	2.496	14.03	1.78	2.9	97.1	0.0	0.46	0.67	0.90	0.82	1.12	9235	698	4	169	1	0	0	logfile
✔	9BYi	45034	2025-06-05	2024-05-23	2.95	3.95	2.96	3.6	0.005	0.65	0.0	0.04	15.74	0.00	2.279	2.89	0.00	5.8	94.2	0.0	4.10	0.73	0.86	2.66	3.6	0.003	0.59	0.0	0.03	15.22	0.00	2.505	1.93	1.80	5.4	94.6	0.0	5.09	1.80	0.66	0.84	2.36	4505	524	4	0	31	0	0	logfile
✔	8ZMH	60247	2025-06-04	2024-05-23	4.6	8.01	4.96	6.0	0.010	1.67	0.0	0.08	27.49	0.01	1.595	16.28	0.00	0.0	0.0	0.0	—	0.89	0.71	—	6.5	0.008	1.14	0.0	0.06	29.73	0.01	1.078	85.81	0.00	0.0	0.0	0.0	—	3.65	0.93	0.86	—	3594	0	1	169	0	0	0	logfile
✘	9BY3	45019	2025-06-14	2024-05-23	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✘	8ZME	60244	2025-06-07	2024-05-23	3.2	2.38	3.21	2.2	0.008	0.87	0.0	0.05	12.33	0.01	2.000	2.58	0.00	4.7	95.3	0.0	-0.71	0.74	0.75	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8687	1143	5	0	0	0	0	logfile
✘	9BYG	45030	2025-06-14	2024-05-23	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✘	9BY9	45023	2025-06-14	2024-05-23	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✔	9BXX	45014	2025-06-14	2024-05-23	4.26	4.20	3.71	3.9	0.008	0.83	3.0	0.06	17.54	0.00	1.912	9.87	1.40	2.1	97.9	0.0	0.57	0.64	0.56	—	3.9	0.004	0.76	0.0	0.05	14.69	0.00	1.790	17.29	0.00	3.1	96.9	0.0	0.41	2.32	0.68	0.72	—	16678	2026	9	2	10	0	0	logfile
✘	9BY2	45018	2025-06-14	2024-05-23	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✔	9BYL	45037	2025-06-14	2024-05-23	2.99	3.48	2.72	3.2	0.008	0.81	3.0	0.06	17.69	0.00	1.912	7.88	1.45	1.7	98.3	0.0	0.59	0.71	0.71	3.47	3.2	0.004	0.69	0.0	0.04	17.91	0.00	1.959	9.67	2.18	2.1	97.9	0.0	1.38	2.38	0.67	0.82	2.92	16706	2030	9	2	10	0	0	logfile
✘	9BYD	45029	2025-06-14	2024-05-23	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16036	1944	8	2	10	0	0	logfile
✔	9BYN	45039	2025-06-04	2024-05-23	3.36	3.18	1.75	3.5	0.006	0.66	0.0	0.05	12.74	0.00	2.177	10.27	0.00	4.6	95.4	0.0	-2.21	0.51	0.84	4.47	3.4	0.003	0.59	0.0	0.05	14.39	0.00	2.481	6.75	1.04	7.6	92.4	0.0	-2.39	1.39	0.45	0.83	3.92	3560	455	5	0	0	0	0	logfile
✔	9BXR	45009	2025-06-06	2024-05-22	3.2	2.90	3.15	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.002	0.60	0.0	0.05	15.26	0.00	2.415	2.51	1.00	6.7	93.3	0.0	-2.51	1.24	0.38	0.78	2.49	7184	462	6	0	0	0	3656	logfile
✔	9BXi	45005	2025-06-06	2024-05-22	2.7	2.84	2.60	2.9	0.010	1.61	0.0	0.08	10.28	0.01	1.231	13.85	0.00	6.7	93.3	0.0	-1.83	0.46	0.86	5.10	2.9	0.003	0.55	0.0	0.05	15.99	0.00	2.485	2.93	0.75	6.4	93.6	0.0	-2.03	1.67	0.46	0.88	3.87	7182	462	6	0	0	0	3654	logfile

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