Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FFB	50353	2025-06-15	2024-05-22	3.59	4.32	3.45	3.6	0.013	0.95	0.0	0.06	20.15	0.01	2.015	13.43	0.16	6.4	93.5	0.0	-0.48	0.87	0.81	0.50	3.6	0.013	0.83	0.0	0.04	20.41	0.00	2.006	12.77	4.12	6.0	93.9	0.0	-0.14	0.37	0.87	0.82	0.40	17255	2066	4	42	0	0	0	logfile
✔	9BXR	45009	2025-06-06	2024-05-22	3.2	2.90	3.15	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.002	0.60	0.0	0.05	15.26	0.00	2.415	2.51	1.00	6.7	93.3	0.0	-2.51	1.24	0.38	0.78	2.49	7184	462	6	0	0	0	3656	logfile
✔	9BXo	45007	2025-06-06	2024-05-22	3.0	2.93	2.89	3.0	0.011	1.74	0.0	0.09	12.75	0.01	2.020	23.59	0.00	4.7	95.3	0.0	-1.64	0.43	0.82	5.05	2.9	0.002	0.57	0.0	0.05	15.93	0.00	2.338	3.63	1.00	2.2	97.8	0.0	-2.02	0.89	0.48	0.86	4.61	7182	462	6	0	0	0	3654	logfile
✔	9BXi	45005	2025-06-06	2024-05-22	2.7	2.84	2.60	2.9	0.010	1.61	0.0	0.08	10.28	0.01	1.231	13.85	0.00	6.7	93.3	0.0	-1.83	0.46	0.86	5.10	2.9	0.003	0.55	0.0	0.05	15.99	0.00	2.485	2.93	0.75	6.4	93.6	0.0	-2.03	1.67	0.46	0.88	3.87	7182	462	6	0	0	0	3654	logfile
✔	9BXC	45004	2025-06-10	2024-05-22	2.76	2.99	2.80	3.0	0.003	0.54	0.0	0.04	18.61	0.00	2.118	11.97	0.81	2.5	97.5	0.0	0.85	0.70	0.82	4.04	3.0	0.003	0.55	0.0	0.04	18.52	0.00	2.255	9.41	1.79	3.2	96.8	0.0	0.46	1.05	0.64	0.78	3.79	11496	1390	6	2	6	0	0	logfile
✔	9BXS	45010	2025-06-14	2024-05-22	3.37	3.77	3.03	3.5	0.008	0.83	3.0	0.06	17.55	0.00	1.912	9.35	1.34	2.1	97.9	0.0	0.58	0.68	0.67	2.67	3.5	0.003	0.66	0.0	0.04	17.66	0.00	1.880	10.36	2.24	2.6	97.4	0.0	1.20	1.28	0.68	0.81	2.58	16678	2026	9	2	10	0	0	logfile
✔	9BX8	44999	2025-06-14	2024-05-22	3.59	3.67	3.12	3.5	0.008	0.71	3.0	0.06	17.17	0.00	1.912	17.05	1.46	1.6	98.4	0.0	1.10	0.71	0.71	2.43	3.5	0.004	0.77	0.0	0.04	17.82	0.00	1.933	14.19	1.75	1.8	98.2	0.0	0.86	1.44	0.70	0.81	2.37	15954	1940	8	0	10	0	0	logfile
✔	9BX2	44991	2025-06-14	2024-05-22	3.79	3.73	3.24	3.5	0.008	0.71	3.0	0.06	17.17	0.00	1.912	17.40	1.40	1.6	98.4	0.0	1.09	0.70	0.70	2.90	3.5	0.004	0.79	0.0	0.05	18.14	0.00	1.940	14.54	2.10	2.3	97.7	0.0	0.80	1.46	0.69	0.79	2.63	15954	1940	8	0	10	0	0	logfile
✔	9BX9	45000	2025-06-14	2024-05-22	3.79	3.73	3.26	3.5	0.008	0.71	3.0	0.06	17.18	0.00	1.911	17.14	1.40	1.6	98.4	0.0	1.09	0.68	0.67	2.65	3.5	0.003	0.70	0.0	0.04	17.52	0.00	1.897	11.87	1.98	2.3	97.7	0.0	1.03	1.40	0.71	0.80	2.35	15954	1940	8	0	10	0	0	logfile
✔	9BX3	44992	2025-06-14	2024-05-22	3.9	3.76	3.33	3.6	0.008	0.71	3.0	0.06	17.18	0.00	1.912	17.02	1.34	1.6	98.4	0.0	1.09	0.68	0.66	2.16	3.6	0.005	0.81	0.0	0.05	17.78	0.00	1.844	16.83	2.57	2.2	97.8	0.0	0.51	2.74	0.71	0.78	1.61	15954	1940	8	0	10	0	0	logfile
✔	9BXT	45011	2025-06-10	2024-05-22	2.88	2.20	2.92	2.9	0.007	0.66	0.0	0.04	18.27	0.00	2.118	12.09	0.99	2.4	97.6	0.0	0.82	0.80	0.79	3.43	2.0	0.003	0.63	0.0	0.04	18.61	0.00	2.233	9.34	2.52	2.9	97.1	0.0	0.63	1.20	0.79	0.80	3.35	12164	1476	7	2	6	0	0	logfile
✔	9BX6	44995	2025-06-14	2024-05-22	3.44	3.61	3.02	3.4	0.008	0.71	3.0	0.06	17.18	0.00	1.911	17.14	1.40	1.6	98.4	0.0	1.10	0.70	0.72	3.32	3.4	0.005	0.73	0.0	0.05	17.97	0.00	1.889	11.62	2.16	1.9	98.1	0.0	1.05	1.42	0.70	0.83	2.95	15954	1940	8	0	10	0	0	logfile
✔	9BWX	44985	2025-06-14	2024-05-22	2.91	3.39	2.62	3.1	0.008	0.71	3.0	0.06	17.18	0.00	1.912	16.99	1.34	1.6	98.4	0.0	1.09	0.71	0.72	3.67	3.1	0.003	0.63	0.0	0.04	17.45	0.00	1.979	8.07	1.75	1.4	98.6	0.0	1.68	1.92	0.69	0.84	3.28	15954	1940	8	0	10	0	0	logfile
✔	9BWJ	44976	2025-06-21	2024-05-21	2.21	2.79	2.16	2.6	0.015	1.02	0.0	0.05	14.55	0.01	2.131	4.78	0.51	2.0	98.0	0.0	-1.33	0.76	0.88	5.15	2.4	0.003	0.61	0.0	0.04	14.97	0.00	2.064	4.71	1.78	1.4	98.6	0.0	1.86	0.92	0.78	0.91	4.86	14705	1730	20	0	55	15	0	logfile
✔	9BWT	44979	2025-06-08	2024-05-21	2.5	2.72	2.59	2.8	0.006	0.71	0.0	0.04	17.53	0.00	1.847	23.32	2.72	4.2	95.6	0.2	1.32	0.47	0.79	3.62	2.8	0.003	0.60	0.0	0.04	17.37	0.00	2.494	6.42	2.14	3.8	96.1	0.1	1.19	0.42	0.61	0.88	3.94	9955	1271	5	0	3	6	0	logfile
✔	8ZM0	60234	2025-06-04	2024-05-21	3.1	3.18	1.79	3.3	0.009	0.53	0.0	0.05	12.83	0.00	2.710	0.22	0.00	0.0	100.0	0.0	-8.10	0.52	0.83	8.98	3.2	0.072	2.93	0.0	0.28	13.82	0.02	2.357	29.86	7.53	43.5	56.5	0.0	-7.84	1.57	0.56	0.87	8.98	2604	248	62	0	0	0	0	logfile
✔	9BWS	44978	2025-06-05	2024-05-21	2.39	3.43	2.42	3.1	0.004	0.68	0.0	0.04	14.79	0.01	2.288	2.97	0.93	4.7	95.3	0.0	4.00	0.74	0.84	3.99	3.2	0.003	0.63	0.0	0.03	15.24	0.00	2.484	2.51	0.46	4.3	95.7	0.0	4.87	2.15	0.65	0.87	3.23	4286	514	4	0	22	0	0	logfile
✔	8ZLU	60233	2025-06-23	2024-05-21	2.47	2.21	2.54	1.9	0.002	0.54	0.0	0.04	19.71	0.00	2.131	5.63	4.41	6.6	93.2	0.1	-0.05	0.82	0.81	3.07	1.9	0.003	0.58	0.0	0.04	19.35	0.00	2.249	4.17	3.59	7.4	92.5	0.1	0.30	1.19	0.84	0.84	3.12	27053	3322	13	59	2	0	0	logfile
✔	9BVQ	44941	2025-06-05	2024-05-20	3.3	3.82	3.28	3.7	0.004	1.39	0.0	0.10	15.64	0.00	2.201	2.52	1.58	1.2	98.8	0.0	0.89	0.70	0.88	3.92	3.7	0.004	0.60	0.0	0.04	13.88	0.00	2.606	3.28	1.11	3.3	96.7	0.0	2.19	1.04	0.64	0.88	3.42	5977	700	6	0	9	0	0	logfile
✔	8ZLP	60232	2025-06-04	2024-05-20	3.5	3.09	3.03	3.4	0.007	0.55	0.0	0.05	12.26	0.00	2.368	4.84	0.00	4.2	95.8	0.0	-4.52	0.48	0.91	4.59	3.4	0.002	0.48	0.0	0.05	14.79	0.00	2.616	2.48	3.43	2.8	97.2	0.0	-2.90	1.91	0.47	0.90	3.82	4116	588	6	0	6	0	0	logfile

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