Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BVQ	44941	2025-06-05	2024-05-20	3.3	3.82	3.28	3.7	0.004	1.39	0.0	0.10	15.64	0.00	2.201	2.52	1.58	1.2	98.8	0.0	0.89	0.70	0.88	3.92	3.7	0.004	0.60	0.0	0.04	13.88	0.00	2.606	3.28	1.11	3.3	96.7	0.0	2.19	1.04	0.64	0.88	3.42	5977	700	6	0	9	0	0	logfile
✔	8ZLo	60231	2025-06-05	2024-05-20	3.1	2.98	2.80	3.3	0.015	1.52	0.0	0.08	17.15	0.01	2.063	28.08	0.00	9.4	90.6	0.0	-4.08	0.25	0.57	3.84	3.1	0.007	1.04	0.0	0.06	15.05	0.00	2.596	10.09	5.70	11.0	89.0	0.0	-4.03	1.95	0.52	0.88	3.82	4816	660	18	0	10	0	0	logfile
✔	8ZLP	60232	2025-06-04	2024-05-20	3.5	3.09	3.03	3.4	0.007	0.55	0.0	0.05	12.26	0.00	2.368	4.84	0.00	4.2	95.8	0.0	-4.52	0.48	0.91	4.59	3.4	0.002	0.48	0.0	0.05	14.79	0.00	2.616	2.48	3.43	2.8	97.2	0.0	-2.90	1.91	0.47	0.90	3.82	4116	588	6	0	6	0	0	logfile
✔	9FEE	50339	2025-06-07	2024-05-19	3.03	3.26	3.13	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	3.3	0.003	0.57	0.0	0.04	16.12	0.00	2.575	4.46	2.82	7.4	92.6	0.0	0.49	0.92	0.74	0.85	2.54	9112	1236	4	0	0	0	0	logfile
✔	9FEF	50340	2025-06-09	2024-05-19	2.98	3.19	3.00	3.2	0.008	0.83	1.0	0.05	16.73	0.01	2.173	6.86	0.58	5.7	94.0	0.3	0.09	0.74	0.86	2.49	3.2	0.003	0.63	0.0	0.04	16.66	0.01	2.562	5.32	2.56	5.7	94.3	0.0	0.69	0.93	0.65	0.85	2.40	11192	1502	5	0	0	0	0	logfile
✔	8ZL9	60223	2025-06-05	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.005	0.83	0.0	0.05	14.34	0.01	2.530	21.86	0.00	11.5	88.4	0.1	-2.19	1.28	0.59	0.56	—	6644	838	5	0	0	0	0	logfile
✔	9FDZ	50334	2025-06-20	2024-05-17	2.86	3.47	2.83	3.3	0.003	0.49	0.0	0.04	14.32	0.00	2.192	3.10	0.59	1.2	98.8	0.0	1.33	0.77	0.89	3.37	3.3	0.003	0.54	0.0	0.04	15.15	0.00	2.502	4.31	1.33	1.2	98.8	0.0	2.03	0.28	0.78	0.89	2.66	23736	3120	3	0	0	0	0	logfile
✔	9FE1	50336	2025-06-07	2024-05-17	3.1	3.31	3.09	3.2	0.005	0.83	0.0	0.05	15.08	0.01	2.042	10.17	0.22	4.5	95.5	0.0	-1.63	0.77	0.70	2.76	3.2	0.003	0.65	0.0	0.04	16.43	0.00	2.333	6.27	2.00	3.6	96.4	0.0	0.27	2.33	0.78	0.73	2.82	8458	539	4	0	0	0	4163	logfile
✔	9BUM	44912	2025-06-04	2024-05-17	3.63	3.97	3.58	3.9	0.005	0.98	0.0	0.06	14.42	0.01	2.278	5.93	0.43	4.3	95.7	0.0	-4.76	0.60	0.78	2.43	3.9	0.003	0.69	0.0	0.04	15.69	0.00	2.522	8.89	1.92	4.0	96.0	0.0	-0.40	1.02	0.60	0.77	2.14	4415	538	3	0	3	0	0	logfile
✔	8ZL9	38897	2025-06-05	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.005	0.83	0.0	0.05	14.34	0.01	2.530	21.86	0.00	11.5	88.4	0.1	-2.19	1.28	0.59	0.56	—	6644	838	5	0	0	0	0	logfile
✔	8ZKT	60208	2025-06-15	2024-05-17	3.34	3.46	3.25	3.4	0.008	0.71	0.0	0.04	14.67	0.00	1.820	9.01	0.11	9.1	90.4	0.5	-1.10	0.63	0.84	2.90	3.4	0.004	0.60	0.0	0.04	16.30	0.00	2.361	4.79	2.18	8.2	91.7	0.1	-0.18	1.15	0.62	0.85	2.64	17369	2166	7	0	9	0	0	logfile
✔	8ZKW	60210	2025-06-07	2024-05-17	2.77	3.79	3.00	3.5	0.005	0.69	0.0	0.05	12.73	0.00	2.101	8.14	0.00	2.5	97.5	0.0	0.83	0.67	0.88	2.97	3.5	0.003	0.60	0.0	0.04	14.50	0.00	2.495	8.14	0.55	2.2	97.8	0.0	1.72	0.36	0.66	0.86	2.22	8504	1080	4	0	4	0	0	logfile
✔	8ZL4	60218	2025-06-07	2024-05-17	3.65	4.23	3.93	4.1	0.006	0.82	0.0	0.05	13.18	0.01	2.252	8.44	0.00	1.8	98.2	0.0	0.78	0.64	0.87	2.37	4.1	0.005	1.13	1.0	0.04	15.64	0.01	2.239	10.95	2.94	1.9	98.1	0.0	1.28	0.95	0.63	0.86	1.40	8596	1082	4	0	6	0	0	logfile
✔	8ZKZ	60213	2025-06-07	2024-05-17	2.7	3.71	2.76	3.4	0.008	0.82	0.0	0.05	11.98	0.01	2.107	3.41	0.22	2.3	97.7	0.0	1.23	0.73	0.89	3.23	3.4	0.003	0.55	0.0	0.04	13.66	0.00	2.525	4.05	0.55	2.1	97.9	0.0	2.17	0.91	0.72	0.88	2.20	8490	1080	4	0	3	0	0	logfile
✔	8ZL6	60220	2025-06-07	2024-05-17	2.8	3.89	2.87	3.6	0.006	0.74	0.0	0.05	11.80	0.00	2.204	5.47	0.33	1.7	98.3	0.0	2.02	0.68	0.86	2.89	3.6	0.002	0.53	0.0	0.04	13.63	0.00	2.523	5.24	0.22	1.7	98.3	0.0	2.33	0.33	0.68	0.87	2.01	8508	1078	4	0	4	0	0	logfile
✔	8ZKU	60209	2025-06-14	2024-05-17	3.34	3.60	3.39	3.6	0.008	0.66	0.0	0.04	14.28	0.00	2.228	5.90	0.00	7.5	92.4	0.1	-0.67	0.66	0.82	2.48	3.6	0.002	0.57	0.0	0.04	15.02	0.00	2.406	4.67	1.91	6.2	93.8	0.0	0.44	0.35	0.65	0.83	1.60	16174	2171	6	0	6	0	0	logfile
✔	8ZL1	60215	2025-06-07	2024-05-17	2.86	3.89	2.90	3.5	0.004	0.65	0.0	0.04	12.59	0.00	2.214	8.00	0.22	2.5	97.5	0.0	1.27	0.71	0.87	2.81	3.5	0.002	0.57	0.0	0.04	14.10	0.00	2.498	7.42	0.88	2.3	97.7	0.0	1.54	0.32	0.71	0.87	2.63	8466	1078	4	0	2	0	0	logfile
✘	8ZKo	60201	2025-06-05	2024-05-17	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6066	772	4	0	3	0	0	logfile
✔	9FDY	50333	2025-06-05	2024-05-17	3.4	3.71	3.59	3.8	0.004	0.54	0.0	0.04	10.68	0.00	2.162	9.26	2.56	4.6	95.4	0.0	-0.50	0.69	0.76	2.62	3.8	0.004	0.69	0.0	0.05	14.51	0.00	2.403	10.42	5.26	6.2	93.8	0.0	-1.05	1.15	0.68	0.77	2.44	6119	770	5	0	0	0	0	logfile
✔	8ZKS	60207	2025-06-14	2024-05-17	3.21	3.57	3.36	3.5	0.003	0.61	0.0	0.04	14.04	0.00	1.942	6.94	0.14	9.1	90.6	0.3	-0.33	0.60	0.79	2.20	3.5	0.005	0.63	0.0	0.04	15.38	0.00	2.534	5.13	2.38	9.3	90.5	0.1	-0.24	0.35	0.62	0.83	2.12	16170	2172	6	0	7	0	0	logfile

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