Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BU6	44901	2025-06-15	2024-05-16	3.65	4.03	3.70	4.0	0.004	0.66	1.0	0.04	15.97	0.01	1.900	5.79	2.88	4.0	95.8	0.3	-1.50	0.74	0.82	2.49	4.0	0.006	0.98	2.0	0.05	17.35	0.01	2.234	4.24	3.80	5.8	94.0	0.2	-1.44	1.22	0.75	0.84	1.93	17439	2193	24	0	24	0	0	logfile
✔	8ZKH	60196	2025-06-15	2024-05-16	2.3	2.44	2.67	2.9	0.007	0.82	0.0	0.08	16.07	0.01	1.186	8.14	0.88	7.1	92.6	0.2	-0.21	0.59	0.78	2.21	2.9	0.003	0.60	0.0	0.04	16.46	0.00	2.483	4.10	2.58	6.5	93.5	0.0	0.61	1.60	0.61	0.82	2.18	17124	2181	8	0	12	0	0	logfile
✔	9BU7	44902	2025-06-11	2024-05-16	3.64	4.08	3.63	4.0	0.005	0.63	0.0	0.05	14.96	0.00	1.785	7.53	2.13	5.5	94.5	0.0	-1.87	0.74	0.76	2.45	4.0	0.003	0.56	0.0	0.04	17.10	0.00	1.934	5.17	3.07	2.6	97.4	0.0	0.51	0.58	0.76	0.78	1.79	12831	1933	12	28	5	0	0	logfile
✔	8ZKE	60190	2025-06-05	2024-05-16	3.72	3.87	3.75	3.9	0.012	1.57	0.0	0.08	17.44	0.01	2.372	25.47	0.99	5.0	95.0	0.0	-3.17	0.47	0.59	1.69	3.9	0.003	0.72	0.0	0.04	16.08	0.00	2.422	10.84	2.65	8.9	90.8	0.3	-0.96	1.71	0.47	0.65	1.89	6057	386	2	0	1	0	3070	logfile
✔	9BUE	44907	2025-06-07	2024-05-16	3.6	3.84	3.66	3.8	0.003	0.57	0.0	0.04	15.56	0.00	2.201	7.24	0.42	1.8	98.2	0.0	0.52	0.66	0.79	1.05	3.8	0.004	0.94	1.0	0.04	16.54	0.00	1.588	8.99	4.94	2.2	97.8	0.0	0.83	0.47	0.67	0.81	1.17	9002	1148	7	0	1	0	0	logfile
✘	8ZJW	60158	2025-06-15	2024-05-15	2.35	2.56	2.35	2.5	0.026	2.28	1.0	0.06	20.98	0.02	2.292	13.66	0.54	1.1	98.9	0.0	3.96	0.71	0.81	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14602	1428	56	0	56	0	0	logfile
✔	8ZK2	60165	2025-06-26	2024-05-15	2.65	2.87	2.70	2.9	0.022	2.01	0.0	0.05	19.51	0.02	2.047	13.02	0.05	2.0	98.0	0.0	1.75	0.70	0.85	4.92	2.9	0.006	0.73	0.0	0.04	18.59	0.00	2.026	10.14	1.64	2.1	97.9	0.0	2.22	1.50	0.66	0.85	4.22	26948	2772	72	0	111	0	0	logfile
✔	9BTU	44896	2025-06-13	2024-05-15	3.68	4.36	4.02	4.0	0.006	0.94	0.0	0.05	15.43	0.01	2.429	1.63	0.13	3.5	96.5	0.0	-2.60	0.74	0.76	2.56	4.0	0.004	0.60	0.0	0.04	13.11	0.00	2.415	5.92	0.54	3.4	96.6	0.0	-0.23	0.68	0.74	0.76	2.55	14283	837	10	0	204	0	6422	logfile
✔	9BTo	44894	2025-06-10	2024-05-15	3.1	3.53	3.15	3.4	0.024	1.78	0.0	0.14	15.34	0.01	2.436	0.48	0.00	1.9	98.1	0.0	0.65	0.86	0.88	4.26	3.3	0.004	0.63	0.0	0.04	12.50	0.00	2.542	4.19	1.33	2.0	98.0	0.0	0.67	1.02	0.83	0.89	3.47	11520	1437	24	0	45	0	0	logfile
✔	9BTW	44898	2025-06-08	2024-05-15	3.0	3.31	3.10	3.3	0.002	0.51	0.0	0.04	15.76	0.00	2.160	4.60	0.10	2.2	97.8	0.0	1.74	0.61	0.76	1.87	3.3	0.002	0.55	0.0	0.04	16.52	0.00	2.392	5.29	2.34	2.1	97.9	0.0	1.91	0.45	0.58	0.76	1.83	9713	1274	8	0	2	0	0	logfile
✘	8ZJM	60150	2025-06-28	2024-05-15	4.52	3.27	4.21	3.6	0.006	0.92	0.0	0.05	14.08	0.01	2.055	50.37	0.00	10.2	89.8	0.0	-2.54	0.85	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32858	4034	6	0	0	0	0	logfile
✔	8ZJi	60146	2025-06-28	2024-05-15	4.23	2.82	4.00	3.3	0.005	0.80	0.0	0.05	14.18	0.00	2.061	32.15	0.00	6.4	93.6	0.0	-1.62	0.83	0.77	—	2.7	0.003	0.71	0.0	0.04	14.26	0.01	2.288	17.06	0.00	4.5	95.5	0.0	-0.49	1.38	0.83	0.79	—	32858	4034	6	0	0	0	0	logfile
✔	8ZJJ	60147	2025-06-28	2024-05-15	4.23	2.77	4.00	3.0	0.005	0.76	0.0	0.05	14.09	0.00	2.005	29.45	0.00	6.8	93.2	0.0	-1.29	0.83	0.80	—	2.7	0.004	0.72	0.0	0.04	14.59	0.00	2.354	19.18	0.00	6.7	93.3	0.0	-0.78	0.49	0.83	0.80	—	32858	4034	6	0	0	0	0	logfile
✔	9BTQ	44895	2025-06-28	2024-05-15	2.4	2.69	2.42	1.8	0.006	0.67	0.0	0.05	14.87	0.00	2.354	2.94	5.80	1.6	98.4	0.0	0.35	0.69	0.91	4.07	2.0	0.003	0.55	0.0	0.05	14.28	0.00	2.575	2.41	1.90	1.1	98.9	0.0	0.83	2.16	0.69	0.92	3.97	34440	4960	40	0	0	0	0	logfile
✔	9FCJ	50317	2025-06-04	2024-05-15	2.7	2.89	2.65	2.9	0.003	0.57	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.56	0.0	0.04	17.09	0.00	2.595	5.24	2.51	2.1	97.9	0.0	1.45	0.42	0.52	0.84	2.79	3174	389	5	0	2	29	0	logfile
✔	8ZJK	60148	2025-06-28	2024-05-15	4.23	2.86	4.02	3.2	0.007	0.89	0.0	0.05	14.03	0.00	2.063	36.05	0.05	7.7	92.3	0.0	-1.44	0.84	0.80	—	3.2	0.003	0.70	0.0	0.04	14.22	0.00	2.361	16.17	0.03	4.8	95.2	0.0	-0.35	0.51	0.84	0.81	—	32858	4034	6	0	0	0	0	logfile
✔	8ZJL	60149	2025-06-28	2024-05-15	4.31	2.94	4.04	2.7	0.005	0.81	0.0	0.05	13.88	0.00	2.086	37.03	0.00	9.0	91.0	0.0	-1.91	0.85	0.79	—	2.6	0.003	0.70	0.0	0.04	14.35	0.00	2.326	15.09	0.00	5.1	94.9	0.0	-0.69	2.33	0.85	0.80	—	32858	4034	6	0	0	0	0	logfile
✔	9BTL	44893	2025-06-15	2024-05-15	2.96	3.62	3.12	3.4	0.005	1.07	2.0	0.06	13.31	0.01	2.232	4.23	0.06	4.8	95.2	0.0	-1.60	0.82	0.86	3.11	3.4	0.003	0.64	0.0	0.04	13.55	0.00	2.470	4.81	1.47	3.1	96.9	0.0	0.28	1.26	0.82	0.88	3.22	16688	1931	49	0	109	0	0	logfile
✔	9BTG	44889	2025-06-16	2024-05-15	3.12	3.77	3.21	3.5	0.005	0.79	0.0	0.05	12.60	0.01	2.433	0.42	0.28	2.0	98.0	0.0	-1.30	0.78	0.86	3.98	3.5	0.002	0.52	0.0	0.04	13.63	0.00	2.437	2.08	0.46	1.5	98.5	0.0	0.53	0.59	0.71	0.83	3.38	19111	1203	8	0	12	0	9273	logfile
✔	8ZiU	60130	2025-06-07	2024-05-14	3.54	3.27	3.04	3.2	0.004	0.62	0.0	0.04	14.02	0.00	2.130	8.41	0.00	5.2	94.8	0.0	-2.79	0.82	0.86	3.04	3.2	0.003	0.56	0.0	0.04	15.69	0.00	2.466	4.76	1.29	5.1	94.9	0.0	0.49	0.45	0.83	0.86	2.69	8668	1085	3	0	1	0	0	logfile

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