Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZJE	60142	2025-06-07	2024-05-14	3.07	3.62	3.23	3.6	0.005	0.71	0.0	0.05	14.59	0.01	2.202	5.20	0.33	3.9	96.1	0.0	1.20	0.57	0.80	3.04	3.6	0.002	0.59	0.0	0.04	15.71	0.00	2.505	5.67	2.41	2.9	97.1	0.0	1.28	0.47	0.52	0.76	2.15	8743	1135	7	0	3	0	0	logfile
✘	8ZJ4	60137	2025-06-07	2024-05-14	2.67	2.69	3.01	1.8	0.005	0.95	1.0	0.07	17.14	0.01	2.083	10.59	2.07	6.1	93.6	0.3	-0.29	0.58	0.47	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8734	1070	15	0	35	0	0	logfile
✔	8ZiV	60121	2025-06-07	2024-05-14	2.95	2.28	3.40	1.6	0.004	0.85	1.0	0.06	18.27	0.01	1.078	11.02	1.85	5.9	93.5	0.6	0.00	0.59	0.54	1.18	1.6	0.003	0.76	0.0	0.05	11.93	0.00	2.411	9.56	2.07	6.6	93.0	0.4	-1.14	0.58	0.60	0.56	1.35	8818	1070	17	0	41	0	0	logfile
✔	9BT8	44881	2025-06-05	2024-05-14	3.34	3.52	3.31	3.5	0.005	0.64	0.0	0.04	16.43	0.00	2.269	6.88	0.32	3.0	97.0	0.0	-0.41	0.74	0.85	2.56	3.5	0.004	0.60	0.0	0.04	16.94	0.00	2.540	5.91	4.67	3.3	96.7	0.0	-0.37	0.30	0.72	0.84	2.26	5712	728	6	0	0	0	0	logfile
✔	9BT2	44880	2025-06-05	2024-05-14	1.93	2.60	1.93	2.4	0.015	1.69	0.0	0.10	14.06	0.01	2.562	0.00	0.40	7.1	92.9	0.0	-0.61	0.58	0.92	6.85	2.4	0.003	0.62	0.0	0.04	12.70	0.00	2.492	2.18	0.81	4.9	95.1	0.0	-0.25	1.14	0.57	0.91	6.16	4457	268	4	0	12	0	2106	logfile
✔	8ZJF	60143	2025-06-09	2024-05-14	2.7	2.89	2.80	2.9	0.003	0.66	0.0	0.04	16.73	0.00	2.127	9.93	2.50	7.2	92.8	0.0	-1.43	0.59	0.69	1.29	2.9	0.003	0.67	0.0	0.04	16.87	0.00	2.182	7.33	3.00	6.9	93.1	0.0	-1.17	1.68	0.69	0.83	2.45	10917	1419	4	0	6	0	0	logfile
✔	8ZiZ	60134	2025-06-04	2024-05-14	2.89	2.50	2.98	2.0	0.005	0.87	0.0	0.06	22.44	0.00	1.264	7.24	2.29	7.9	91.9	0.2	-0.39	0.70	0.65	1.68	2.0	0.004	1.38	1.0	0.05	13.92	0.01	2.028	11.67	3.44	12.4	87.4	0.2	-1.73	1.18	0.72	0.68	1.41	4392	511	12	0	34	0	0	logfile
✔	8ZiW	60131	2025-06-04	2024-05-14	2.92	2.49	3.00	2.0	0.005	0.88	0.0	0.06	22.01	0.00	2.247	8.18	1.81	8.7	91.3	0.0	-0.82	0.65	0.58	1.89	1.9	0.003	0.91	0.0	0.05	12.42	0.01	2.467	11.52	2.26	11.3	88.7	0.0	-2.04	1.02	0.67	0.61	1.74	4450	519	12	0	34	0	0	logfile
✔	8ZJ1	60135	2025-06-12	2024-05-14	4.25	4.27	4.18	4.2	0.012	0.82	0.0	0.06	13.66	0.01	2.196	10.16	0.00	5.9	94.1	0.0	-2.24	0.79	0.74	—	4.2	0.003	0.70	0.0	0.04	13.50	0.00	2.447	8.95	0.00	4.0	96.0	0.0	1.05	2.29	0.82	0.87	—	14625	1855	10	0	5	0	0	logfile
✔	8ZiU	60130	2025-06-07	2024-05-14	3.54	3.27	3.04	3.2	0.004	0.62	0.0	0.04	14.02	0.00	2.130	8.41	0.00	5.2	94.8	0.0	-2.79	0.82	0.86	3.04	3.2	0.003	0.56	0.0	0.04	15.69	0.00	2.466	4.76	1.29	5.1	94.9	0.0	0.49	0.45	0.83	0.86	2.69	8668	1085	3	0	1	0	0	logfile
✔	8ZJG	60144	2025-06-08	2024-05-14	3.18	3.56	3.29	3.5	0.005	0.82	0.0	0.05	15.71	0.01	2.180	14.09	1.00	6.0	93.9	0.1	0.03	0.64	0.83	1.97	3.5	0.003	0.67	0.0	0.04	16.21	0.00	2.472	8.11	3.53	5.8	94.1	0.1	0.29	0.48	0.65	0.85	2.18	10123	1274	8	0	4	1	0	logfile
✔	9BSW	44874	2025-06-25	2024-05-14	2.06	2.80	2.12	2.5	0.013	1.70	4.0	0.10	13.10	0.01	2.503	0.30	0.40	2.9	97.1	0.0	0.41	0.86	0.93	5.57	2.5	0.003	0.56	0.0	0.04	12.83	0.00	2.465	3.24	1.06	2.6	97.4	0.0	0.53	0.97	0.86	0.93	5.07	29387	3582	29	0	94	0	0	logfile
✔	8ZiP	60125	2025-06-07	2024-05-14	4.9	4.46	4.59	4.2	0.006	0.69	0.0	0.05	14.31	0.00	1.384	15.27	0.00	6.7	93.3	0.0	-3.13	0.84	0.72	—	4.2	0.003	0.71	0.0	0.04	14.38	0.00	2.390	11.90	0.00	4.9	95.1	0.0	0.32	1.14	0.86	0.76	—	8662	1084	3	0	1	0	0	logfile
✔	9BT9	44884	2025-06-04	2024-05-14	2.11	2.62	2.10	2.5	0.015	1.72	0.0	0.10	14.40	0.02	2.582	0.00	0.40	8.6	91.4	0.0	-1.00	0.66	0.93	7.48	2.5	0.004	0.66	0.0	0.04	12.87	0.00	2.531	4.98	1.21	4.5	95.5	0.0	-0.73	0.99	0.67	0.93	6.91	2365	268	5	0	13	0	0	logfile
✔	9BT0	44878	2025-06-25	2024-05-14	2.23	2.91	2.30	2.7	0.006	0.86	1.0	0.06	14.01	0.01	2.214	3.15	0.53	2.7	97.3	0.0	0.58	0.87	0.93	4.97	2.7	0.004	0.59	0.0	0.04	13.09	0.00	2.463	3.46	1.09	2.6	97.4	0.0	0.48	2.05	0.86	0.93	4.82	29373	3582	27	0	93	0	0	logfile
✔	8ZJD	60141	2025-06-07	2024-05-14	3.06	3.48	3.18	3.4	0.005	0.70	0.0	0.05	14.50	0.00	2.200	6.08	0.54	3.3	96.7	0.0	0.74	0.63	0.83	2.57	3.4	0.003	0.61	0.0	0.04	15.64	0.00	2.506	5.62	2.59	3.7	96.3	0.0	0.98	0.84	0.60	0.80	2.31	8820	1144	6	0	0	0	0	logfile
✔	8ZiX	60132	2025-06-15	2024-05-14	3.54	2.85	3.50	3.5	0.005	0.71	0.0	0.05	13.61	0.00	2.114	10.39	0.00	6.4	93.6	0.0	-3.40	0.68	0.82	2.91	3.5	0.004	0.65	0.0	0.04	15.57	0.00	2.446	8.26	2.81	5.3	94.7	0.0	-0.31	0.44	0.68	0.82	2.67	17556	2226	12	0	6	0	0	logfile
✔	9BSV	44873	2025-06-08	2024-05-13	3.1	3.64	3.06	3.5	0.006	0.79	1.0	0.06	19.52	0.01	1.819	7.83	0.69	4.2	95.1	0.7	-0.72	0.81	0.89	4.06	3.5	0.003	0.62	0.0	0.04	15.97	0.00	2.402	3.76	1.19	4.5	95.2	0.3	-0.41	0.37	0.77	0.87	3.93	9879	1248	10	0	21	0	0	logfile
✔	8Zi4	60121	2025-06-07	2024-05-13	2.95	2.27	3.40	1.6	0.004	0.86	1.0	0.06	18.35	0.01	1.991	9.44	1.85	6.4	93.0	0.6	-0.15	0.59	0.53	1.16	1.6	0.004	0.83	0.0	0.05	12.34	0.00	2.394	13.46	2.73	8.8	90.8	0.4	-1.63	0.66	0.61	0.57	1.60	8818	1070	17	0	41	0	0	logfile
✔	8Zi9	60122	2025-06-07	2024-05-13	3.08	3.35	3.08	3.3	0.008	0.71	0.0	0.05	14.97	0.00	2.157	14.26	0.00	5.5	94.5	0.0	-2.50	0.79	0.73	2.04	3.2	0.003	0.62	0.0	0.04	16.65	0.00	2.453	6.26	1.77	4.2	95.8	0.0	0.89	1.55	0.85	0.87	1.91	8899	1113	3	0	1	0	0	logfile

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