Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MQS	48538	2025-06-05	2025-01-06	3.1	3.38	3.07	3.3	0.009	1.12	0.0	0.09	28.91	0.01	2.080	48.08	0.00	0.0	0.0	0.0	—	0.62	0.66	—	3.5	0.005	0.83	0.0	0.04	25.08	0.01	2.065	18.16	0.00	0.0	0.0	0.0	—	1.05	0.65	0.72	—	5207	0	2	243	9	1	0	logfile
✔	9LDR	63006	2025-06-06	2025-01-06	3.58	3.81	3.54	3.8	0.007	0.84	0.0	0.04	15.48	0.00	2.184	14.85	1.77	8.7	91.3	0.0	-2.99	0.65	0.83	1.44	3.8	0.003	0.67	0.0	0.04	16.36	0.00	2.523	7.66	2.53	5.1	94.9	0.0	0.58	0.98	0.63	0.78	0.64	7274	935	3	0	0	0	0	logfile
✔	9MQY	48544	2025-06-05	2025-01-06	3.0	3.64	3.04	3.5	0.007	0.75	0.0	0.05	12.52	0.01	2.375	0.79	0.67	2.6	97.4	0.0	-1.16	0.76	0.87	6.11	3.5	0.005	0.60	0.0	0.05	13.51	0.00	2.603	2.67	2.00	1.6	98.4	0.0	0.80	1.34	0.74	0.87	5.58	6448	894	4	0	2	0	0	logfile
✔	9LCR	62991	2025-06-13	2025-01-05	2.6	2.84	2.72	2.8	0.009	1.38	0.0	0.17	26.42	0.00	1.972	3.98	0.00	0.0	0.0	0.0	—	0.73	0.75	—	2.8	0.008	0.86	0.0	0.04	24.81	0.01	1.914	5.01	0.00	0.0	0.0	0.0	—	1.30	0.78	0.87	—	15550	0	4	724	28	0	0	logfile
✔	9LBS	62955	2025-06-08	2025-01-03	3.41	2.53	3.40	2.2	0.004	0.77	0.0	0.05	17.05	0.01	2.215	8.06	0.69	12.1	87.5	0.5	-3.57	0.68	0.70	1.51	2.2	0.003	0.68	0.0	0.04	17.21	0.00	2.494	7.38	4.29	12.0	87.9	0.1	-3.11	0.31	0.70	0.73	1.45	6730	867	8	0	3	0	0	logfile
✔	9MQH	48524	2025-06-04	2025-01-03	3.9	4.08	3.69	4.0	0.003	0.59	0.0	0.04	15.16	0.00	2.206	4.68	3.92	3.2	96.8	0.0	1.41	0.55	0.80	1.35	4.0	0.003	0.56	0.0	0.04	16.02	0.00	2.638	4.44	5.39	2.9	97.1	0.0	2.34	0.36	0.54	0.79	0.74	2074	281	1	0	0	0	0	logfile
✔	9MQ6	48514	2025-06-08	2025-01-02	3.3	3.80	3.20	3.6	0.003	0.47	0.0	0.04	10.60	0.00	2.234	4.50	0.48	4.9	95.1	0.0	0.81	0.62	0.88	1.91	3.6	0.004	0.67	0.0	0.04	14.28	0.00	2.435	5.82	1.14	5.6	94.4	0.0	1.27	1.05	0.62	0.89	1.76	9917	1252	5	0	4	0	0	logfile
✔	9HVW	52444	2025-06-07	2025-01-02	3.1	3.42	3.15	3.4	0.004	0.82	0.0	0.05	16.16	0.01	2.573	6.17	1.53	4.7	95.3	0.0	-2.70	0.56	0.61	0.92	3.4	0.004	0.62	0.0	0.04	17.17	0.00	2.520	12.01	4.31	5.0	95.0	0.0	-1.78	1.12	0.64	0.75	2.14	8950	1149	8	0	0	0	0	logfile
✔	9LAE	62925	2025-06-05	2025-01-02	3.46	3.62	3.40	3.6	0.006	0.75	0.0	0.05	13.67	0.00	2.120	8.61	0.00	8.0	91.8	0.2	-3.66	0.52	0.71	3.84	3.6	0.005	1.46	2.0	0.05	16.38	0.00	2.074	9.12	3.47	7.4	92.6	0.0	-1.63	0.42	0.71	0.88	3.53	5000	645	6	0	1	0	0	logfile
✔	9L9P	62912	2025-06-08	2024-12-30	4.3	4.10	3.70	4.0	0.010	1.11	0.0	0.05	16.92	0.00	2.218	10.26	0.37	10.1	88.7	1.2	-1.91	0.42	0.71	—	4.0	0.010	0.93	0.0	0.05	14.16	0.00	2.506	10.21	0.00	12.2	87.2	0.6	-1.89	0.69	0.44	0.80	—	9999	1274	6	0	1	0	0	logfile
✔	9MoT	48481	2025-06-11	2024-12-27	3.15	2.63	3.06	3.1	0.004	0.80	0.0	0.05	13.94	0.01	2.447	19.20	0.29	12.2	87.8	0.0	-3.32	0.70	0.61	1.73	3.1	0.005	0.83	0.0	0.05	16.26	0.01	2.427	22.19	3.25	12.4	87.5	0.1	-3.48	1.02	0.71	0.63	1.39	12708	1561	6	0	8	0	0	logfile
✔	9MoV	48439	2025-06-12	2024-12-27	3.0	3.68	2.87	3.2	0.005	0.86	0.0	0.06	13.83	0.01	1.010	19.25	0.33	11.6	88.4	0.0	-3.02	0.70	0.48	1.10	3.3	0.004	0.86	0.0	0.05	16.38	0.01	2.074	22.99	2.53	10.6	89.3	0.1	-2.99	0.85	0.76	0.62	1.02	13898	1707	8	0	16	0	0	logfile
✔	9HVC	52431	2025-06-04	2024-12-26	2.24	2.61	2.27	2.8	0.006	1.61	0.0	0.04	19.50	0.01	2.184	4.45	0.00	0.0	100.0	0.0	2.75	0.18	0.58	1.04	2.6	0.003	0.44	0.0	0.04	17.64	0.00	2.629	4.45	1.96	3.0	97.0	0.0	3.88	1.01	0.25	0.86	4.07	578	69	2	0	1	31	0	logfile
✔	9L7M	62874	2025-06-14	2024-12-26	3.48	3.59	3.39	3.6	0.026	1.54	0.0	0.08	19.06	0.01	1.616	27.17	6.83	17.9	81.5	0.6	-6.00	0.62	0.74	1.49	3.5	0.006	0.98	0.0	0.05	18.29	0.00	1.878	11.75	2.90	5.4	94.6	0.0	-1.65	1.71	0.66	0.82	2.36	16181	2047	9	0	8	0	0	logfile
✔	9MNX	48442	2025-06-05	2024-12-24	3.11	2.25	3.05	2.0	0.021	1.47	0.0	0.09	14.42	0.01	2.195	12.07	0.54	13.6	86.4	0.0	-4.29	0.77	0.78	3.33	2.1	0.004	0.66	0.0	0.04	16.00	0.01	2.589	3.48	1.08	4.9	95.1	0.0	-1.46	0.40	0.76	0.79	2.23	5240	663	7	0	1	0	0	logfile
✔	9L6C	62852	2025-06-08	2024-12-24	3.33	2.45	3.21	2.2	0.002	0.58	0.0	0.04	15.30	0.00	2.255	6.93	0.27	5.5	94.2	0.3	-1.01	0.69	0.74	2.79	2.1	0.004	0.60	0.0	0.04	15.77	0.00	2.581	6.18	3.57	7.1	92.7	0.2	-1.06	0.31	0.71	0.78	3.31	6766	874	8	0	2	0	0	logfile
✔	9MNZ	48444	2025-06-05	2024-12-24	2.73	2.24	2.80	2.0	0.020	1.50	0.0	0.09	14.22	0.01	2.151	11.27	0.70	11.5	88.5	0.0	-3.42	0.77	0.76	3.58	2.0	0.004	0.74	0.0	0.04	15.91	0.01	2.538	4.61	2.64	5.8	94.2	0.0	-1.14	0.36	0.79	0.79	2.90	5382	682	7	0	1	0	0	logfile
✘	9MNY	48443	2025-06-05	2024-12-24	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5332	675	7	0	1	0	0	logfile
✔	9MNH	48423	2025-06-09	2024-12-21	4.03	4.35	3.39	4.1	0.005	1.08	0.0	0.06	13.65	0.01	2.267	3.96	0.16	7.5	92.4	0.1	-2.41	0.84	0.83	—	4.1	0.003	0.69	0.0	0.05	13.23	0.00	2.424	6.01	0.00	6.0	93.8	0.1	-0.45	1.17	0.85	0.84	—	10875	1383	12	0	30	0	0	logfile
✔	9MMV	48404	2025-06-05	2024-12-20	3.79	2.98	3.74	1.4	0.004	0.82	0.0	0.05	15.10	0.01	1.340	10.87	1.08	3.5	96.2	0.2	1.43	0.89	0.84	2.37	1.5	0.005	0.68	0.0	0.04	15.18	0.00	2.443	7.17	5.93	5.1	94.8	0.1	0.79	0.61	0.90	0.84	2.22	4968	837	4	0	0	0	0	logfile

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