Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LiU	63123	2025-06-17	2025-01-14	2.7	3.43	3.04	3.2	0.014	0.89	0.0	0.05	24.81	0.01	2.011	14.07	3.71	6.0	94.0	0.0	-0.19	0.88	0.85	2.85	3.2	0.004	0.61	0.0	0.04	24.59	0.00	1.938	8.09	1.92	4.4	95.6	0.0	1.19	1.18	0.86	0.83	1.91	19587	1678	14	292	4	0	0	logfile
✔	9LJ2	63131	2025-06-18	2025-01-14	2.98	3.63	3.05	3.3	0.005	0.73	0.0	0.04	24.54	0.00	2.044	15.37	0.18	8.0	92.0	0.0	-0.69	0.87	0.84	1.94	3.3	0.003	0.67	0.0	0.04	25.09	0.00	2.050	11.83	1.35	6.6	93.4	0.0	0.32	0.45	0.87	0.85	1.14	21131	1861	14	294	4	0	0	logfile
✔	9MUo	48639	2025-06-07	2025-01-14	3.3	3.88	3.31	3.7	0.005	0.81	0.0	0.05	17.64	0.01	2.216	14.39	1.45	5.3	94.3	0.4	-0.28	0.61	0.85	1.70	3.7	0.003	0.71	0.0	0.05	17.56	0.00	2.453	13.13	3.90	4.6	95.4	0.0	0.49	1.04	0.61	0.87	2.13	8410	1012	7	8	1	0	0	logfile
✔	9HZE	52523	2025-06-14	2025-01-13	3.23	4.07	3.26	3.7	0.002	0.42	0.0	0.04	12.45	0.00	2.430	5.07	0.00	3.2	96.8	0.0	0.52	0.81	0.82	3.79	3.7	0.002	0.48	0.0	0.04	12.14	0.00	2.553	3.39	0.48	0.0	100.0	0.0	1.68	0.45	0.91	0.92	4.42	16152	2280	24	0	0	0	0	logfile
✔	9MUE	48630	2025-06-07	2025-01-13	4.0	4.21	3.13	4.2	0.005	0.81	0.0	0.05	18.80	0.01	2.101	15.54	1.00	4.9	94.5	0.6	0.03	0.66	0.86	—	4.2	0.003	0.67	0.0	0.04	18.61	0.00	2.508	12.03	3.12	6.4	93.6	0.0	0.00	0.90	0.67	0.87	—	8438	1012	8	8	2	0	0	logfile
✔	9MU8	48623	2025-06-27	2025-01-13	3.37	4.13	3.43	3.5	0.004	0.75	0.0	0.05	15.60	0.01	2.242	4.55	0.09	3.7	96.2	0.1	-1.40	0.91	0.82	1.86	3.5	0.005	0.67	0.0	0.04	16.90	0.00	2.441	8.59	0.99	4.0	96.0	0.0	0.71	0.60	0.93	0.87	1.70	31485	3689	19	99	8	0	0	logfile
✔	9MU3	48618	2025-06-24	2025-01-13	3.14	3.36	3.22	3.3	0.006	0.99	0.0	0.06	13.62	0.01	2.412	0.07	0.00	3.1	96.9	0.0	-0.46	0.76	0.87	3.70	3.3	0.002	0.56	0.0	0.04	17.32	0.00	2.522	4.46	3.30	1.4	98.6	0.0	0.73	1.50	0.74	0.87	3.23	28932	3558	36	0	0	0	0	logfile
✔	9MU4	48619	2025-06-11	2025-01-13	3.29	3.84	3.34	3.5	0.006	0.84	0.0	0.05	28.80	0.01	2.302	2.50	0.00	3.7	96.3	0.0	-1.86	0.90	0.86	2.88	3.5	0.004	0.61	0.0	0.03	29.06	0.00	2.290	8.71	1.91	4.6	95.4	0.0	2.04	1.22	0.91	0.88	2.04	12794	770	10	328	0	0	0	logfile
✔	9MTY	48616	2025-06-05	2025-01-12	3.05	2.52	2.94	2.9	0.009	1.16	0.0	0.08	21.34	0.01	2.052	2.43	0.39	2.4	97.2	0.3	-0.43	0.62	0.73	3.83	2.9	0.004	0.65	0.0	0.04	23.20	0.00	2.187	7.44	1.76	2.4	97.6	0.0	2.44	1.50	0.63	0.76	3.45	7106	586	9	112	4	0	0	logfile
✔	9LGW	63074	2025-06-08	2025-01-10	2.7	2.88	2.71	2.9	0.004	0.59	0.0	0.05	14.83	0.00	2.279	4.69	1.62	5.2	94.8	0.0	-1.08	0.59	0.70	2.61	2.9	0.003	0.55	0.0	0.05	15.45	0.00	2.266	4.69	1.62	6.0	94.0	0.0	-0.69	0.38	0.59	0.70	2.55	10043	603	2	0	0	0	5083	logfile
✔	9MSY	48591	2025-06-21	2025-01-10	3.4	3.65	3.46	3.6	0.005	1.06	0.0	0.06	15.85	0.02	2.285	2.53	0.47	6.8	93.2	0.0	-2.50	0.70	0.79	2.47	3.6	0.003	0.71	0.0	0.05	15.31	0.00	2.449	7.67	2.74	5.4	94.6	0.0	-1.13	0.50	0.71	0.80	2.53	24315	2952	42	0	90	0	0	logfile
✔	9LGM	63068	2025-06-06	2025-01-10	2.84	2.19	2.85	1.9	0.004	0.61	0.0	0.04	16.71	0.00	2.028	13.12	0.24	2.9	97.1	0.0	0.64	0.80	0.81	3.05	1.9	0.004	0.63	0.0	0.04	17.27	0.00	2.439	9.00	4.52	3.1	96.9	0.0	0.88	1.10	0.79	0.81	2.78	8061	1049	5	0	0	0	0	logfile
✔	9MSD	48575	2025-06-20	2025-01-09	3.2	3.50	3.26	3.5	0.005	0.92	0.0	0.05	13.63	0.02	2.298	0.69	0.57	5.1	94.9	0.0	-1.10	0.69	0.79	3.57	3.5	0.003	0.63	0.0	0.04	14.35	0.00	2.504	5.20	2.49	3.9	96.1	0.0	-0.44	0.45	0.75	0.85	3.27	24285	3036	27	0	48	0	0	logfile
✔	9MS8	48568	2025-06-08	2025-01-09	3.73	4.13	3.84	4.0	0.003	0.75	0.0	0.04	16.24	0.00	2.522	7.79	1.12	8.0	92.0	0.0	-0.91	0.65	0.82	2.19	4.0	0.003	0.75	0.0	0.04	17.09	0.00	2.428	9.57	4.06	7.6	92.4	0.0	-0.11	0.96	0.66	0.82	1.91	9290	1189	3	0	0	0	0	logfile
✔	9MRM	48559	2025-06-16	2025-01-08	4.52	4.54	4.53	4.5	0.003	0.65	0.0	0.04	12.05	0.01	2.118	3.98	0.00	4.2	95.5	0.3	-0.82	0.68	0.74	—	4.5	0.003	0.68	0.0	0.04	13.06	0.00	2.378	8.28	0.00	3.7	96.0	0.3	0.75	1.74	0.69	0.76	—	18294	2350	12	0	0	0	0	logfile
✔	9MRN	48560	2025-06-16	2025-01-08	3.46	3.69	3.60	3.6	0.005	0.77	0.0	0.05	12.21	0.01	2.256	2.23	0.56	3.5	96.4	0.1	-0.30	0.71	0.84	2.54	3.6	0.006	0.71	0.0	0.04	15.26	0.00	2.503	4.63	3.38	4.1	95.8	0.1	1.32	2.08	0.72	0.86	1.83	18298	2350	12	0	0	0	0	logfile
✔	9MRK	48557	2025-06-16	2025-01-08	3.62	3.87	3.77	3.8	0.003	0.59	0.0	0.04	11.69	0.01	2.242	2.37	0.00	4.1	95.7	0.2	-1.34	0.68	0.78	2.52	3.8	0.003	0.66	0.0	0.04	15.49	0.00	2.367	4.39	3.17	3.4	96.6	0.1	1.01	2.36	0.71	0.80	1.83	18298	2350	12	0	0	0	0	logfile
✔	9MRL	48558	2025-06-16	2025-01-08	4.17	4.28	4.19	4.2	0.004	0.68	0.0	0.05	12.02	0.01	2.140	3.84	0.00	4.1	95.6	0.3	-0.71	0.58	0.69	—	4.2	0.003	0.64	0.0	0.04	13.22	0.00	2.482	6.16	0.00	3.0	96.8	0.2	0.66	0.94	0.60	0.71	—	18294	2350	12	0	0	0	0	logfile
✔	9HXA	52458	2025-06-04	2025-01-07	3.7	3.04	3.74	3.4	0.006	0.81	0.0	0.06	10.52	0.00	2.589	0.00	0.00	6.7	93.3	0.0	-2.61	0.24	0.67	5.09	3.7	0.003	0.64	0.0	0.05	15.26	0.00	2.659	7.50	10.47	9.2	90.8	0.0	-2.21	0.83	0.24	0.67	4.86	848	124	2	0	0	0	0	logfile
✔	9MR7	48554	2025-06-11	2025-01-07	3.56	4.58	3.62	3.7	0.003	0.67	0.0	0.05	12.26	0.01	2.240	3.62	0.22	4.1	95.9	0.0	-0.83	0.79	0.76	2.52	3.7	0.004	0.61	0.0	0.04	14.15	0.00	2.449	5.36	1.49	4.2	95.8	0.0	-0.13	1.69	0.86	0.83	2.04	12463	1605	12	0	0	0	0	logfile

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