Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LSJ	63357	2025-06-13	2025-02-04	3.1	4.05	3.34	3.7	0.006	0.81	0.0	0.05	15.93	0.00	2.205	10.55	0.12	4.9	95.1	0.0	-0.69	0.80	0.83	3.29	3.7	0.003	0.61	0.0	0.04	14.90	0.00	2.498	9.23	0.78	4.0	96.0	0.0	0.10	1.11	0.80	0.84	2.62	15438	1989	11	0	15	0	0	logfile
✔	9N49	48871	2025-06-05	2025-02-02	3.0	3.90	3.06	5.2	0.007	1.16	0.0	0.07	14.03	0.01	2.368	6.09	0.17	4.2	95.8	0.0	1.06	0.31	0.26	0.66	3.5	0.006	1.10	0.0	0.05	17.04	0.01	2.339	14.97	3.45	4.5	95.5	0.0	0.86	2.13	0.45	0.79	1.28	6509	925	6	0	0	0	0	logfile
✔	9LRR	63340	2025-06-13	2025-02-01	2.68	2.89	2.69	2.9	0.003	0.82	0.0	0.04	14.41	0.01	1.995	2.41	0.06	2.5	97.5	0.0	1.07	0.36	0.61	3.94	2.9	0.002	0.54	0.0	0.04	15.77	0.00	2.453	3.60	1.79	1.9	98.1	0.0	0.87	0.43	0.70	0.88	3.71	15134	1921	15	0	12	36	0	logfile
✘	9i65	52650	2025-06-07	2025-01-29	4.1	4.36	3.98	4.4	0.003	0.66	0.0	0.05	11.38	0.00	2.162	11.35	0.00	11.3	88.2	0.5	-1.25	0.69	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8433	1215	9	0	0	0	0	logfile
✔	9i5H	52629	2025-06-20	2025-01-28	2.7	3.84	3.00	3.6	0.008	0.68	0.0	0.05	12.01	0.00	2.199	5.93	0.27	4.9	95.0	0.1	0.45	0.50	0.85	4.30	3.6	0.003	0.64	0.0	0.05	15.12	0.00	2.473	5.01	1.70	3.4	96.6	0.0	1.15	1.07	0.52	0.87	3.23	23324	3111	17	0	0	0	0	logfile
✔	9N1Y	48824	2025-06-17	2025-01-27	3.23	4.00	3.37	3.8	0.003	0.56	0.0	0.04	14.54	0.00	2.268	3.23	1.17	3.9	96.0	0.1	1.41	0.66	0.81	1.46	3.8	0.003	0.50	0.0	0.04	15.36	0.00	2.450	3.44	0.78	3.9	96.0	0.1	1.97	0.36	0.66	0.81	1.13	19216	1230	1	0	0	0	9645	logfile
✘	9N13	48804	2025-06-05	2025-01-24	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4424	269	4	0	12	0	2083	logfile
✔	9N0X	48797	2025-06-05	2025-01-24	3.3	3.55	3.37	3.6	0.008	0.96	0.0	0.04	23.18	0.01	2.210	8.45	0.29	4.0	96.0	0.0	1.18	0.64	0.77	1.69	3.6	0.003	0.52	0.0	0.04	19.40	0.00	2.498	4.53	2.91	3.7	96.3	0.0	1.61	0.80	0.63	0.77	1.26	6588	760	4	0	8	0	0	logfile
✔	9N17	48808	2025-06-05	2025-01-24	3.09	3.77	2.85	3.6	0.015	1.66	0.0	0.10	14.20	0.01	2.570	0.22	0.40	8.3	91.4	0.4	-1.34	0.48	0.77	5.31	3.5	0.003	0.59	0.0	0.04	11.75	0.00	2.404	1.74	1.62	6.0	94.0	0.0	-0.81	0.73	0.50	0.81	5.16	4454	268	4	0	13	0	2095	logfile
✔	9LoN	63250	2025-06-04	2025-01-23	3.0	2.99	2.19	3.1	0.009	0.65	0.0	0.05	13.10	0.00	2.359	2.29	0.00	4.7	95.3	0.0	-3.50	0.45	0.92	6.73	3.1	0.003	0.44	0.0	0.05	14.94	0.00	2.626	0.88	0.69	2.6	97.4	0.0	-1.37	0.90	0.44	0.92	6.58	2772	396	6	0	0	0	0	logfile
✘	9MZT	48768	2025-06-24	2025-01-23	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28143	3392	101	0	53	0	0	logfile
✔	9MZU	48769	2025-06-15	2025-01-23	2.4	3.21	2.49	2.9	0.003	0.53	0.0	0.04	17.08	0.00	2.048	12.02	2.00	3.2	96.7	0.1	0.29	0.75	0.89	4.12	2.9	0.003	0.74	1.0	0.05	16.54	0.00	2.067	13.89	1.41	3.5	96.4	0.0	0.98	0.43	0.70	0.89	3.86	17517	2094	21	0	39	3	6	logfile
✔	9LLD	63198	2025-06-14	2025-01-17	3.6	4.83	3.56	3.6	0.003	0.56	0.0	0.04	14.89	0.00	2.221	8.69	0.07	6.3	93.7	0.0	-0.60	0.86	0.61	1.72	3.7	0.003	0.57	0.0	0.04	15.04	0.00	2.585	6.21	3.07	6.9	93.0	0.0	-1.10	1.82	0.89	0.88	2.00	16287	2334	9	0	0	0	0	logfile
✔	9MW8	48697	2025-06-05	2025-01-17	3.3	4.53	3.31	4.0	0.002	0.63	0.0	0.04	18.27	0.00	2.077	13.98	1.33	3.3	96.6	0.2	1.50	0.85	0.75	0.46	4.0	0.002	0.64	0.0	0.04	18.43	0.00	2.491	9.78	1.83	2.8	96.9	0.3	1.69	1.30	0.85	0.76	0.43	6419	647	4	54	2	0	0	logfile
✔	9MX3	48708	2025-06-05	2025-01-17	3.0	3.93	3.03	3.5	0.003	0.63	0.0	0.04	17.07	0.00	2.208	6.38	1.68	3.8	96.2	0.0	1.64	0.86	0.83	1.60	3.5	0.002	0.60	0.0	0.04	17.24	0.00	2.242	5.00	2.52	3.9	96.1	0.0	2.14	0.33	0.86	0.82	1.24	5929	641	4	33	1	0	0	logfile
✔	9LKY	63188	2025-06-27	2025-01-17	3.93	4.25	4.04	4.1	0.004	0.60	0.0	0.04	15.03	0.00	1.998	7.88	0.00	5.6	94.4	0.0	-0.51	0.79	0.80	1.15	4.1	0.003	0.70	0.0	0.04	16.85	0.00	1.960	12.86	2.31	5.3	94.7	0.0	0.70	0.80	0.80	0.83	1.35	26308	3277	13	0	6	0	0	logfile
✔	9MX5	48710	2025-06-05	2025-01-17	3.1	3.96	3.22	3.7	0.003	0.56	0.0	0.04	18.21	0.00	2.169	8.83	1.32	4.2	95.7	0.2	2.06	0.84	0.85	1.94	3.7	0.005	0.72	0.0	0.04	18.22	0.00	2.396	7.95	1.49	4.9	94.9	0.2	1.74	0.99	0.84	0.86	1.68	6463	652	4	54	3	0	0	logfile
✔	9LKX	63187	2025-06-05	2025-01-16	3.76	3.91	3.78	3.8	0.003	0.64	0.0	0.04	14.63	0.01	2.286	7.56	0.18	7.3	92.7	0.0	-0.75	0.70	0.76	1.03	3.8	0.003	0.66	0.0	0.04	17.04	0.00	2.340	13.25	2.70	7.4	92.6	0.0	0.44	1.10	0.71	0.78	0.98	5105	650	2	0	0	0	0	logfile
✔	9MW6	48678	2025-06-05	2025-01-16	3.4	4.48	3.46	4.2	0.004	0.62	0.0	0.04	17.58	0.00	2.098	12.23	2.43	6.4	93.6	0.0	-0.15	0.78	0.78	1.20	4.1	0.002	0.63	0.0	0.04	17.85	0.00	2.568	8.70	1.83	6.8	93.2	0.0	0.05	0.93	0.78	0.78	1.28	5473	535	3	54	0	0	0	logfile
✔	9MW7	48691	2025-06-05	2025-01-16	3.4	4.43	3.48	3.9	0.008	0.62	0.0	0.04	18.41	0.00	2.138	15.61	1.01	9.2	90.6	0.2	-1.07	0.83	0.66	0.86	3.9	0.003	0.66	0.0	0.04	18.77	0.00	1.895	13.33	1.22	9.2	90.4	0.4	-1.39	1.00	0.84	0.67	1.05	5504	535	4	54	2	0	0	logfile

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