Table showing results for July 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oQZ	13035	2021-07-01	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.9	0.003	0.69	0.0	0.04	16.95	0.00	2.174	8.93	0.51	3.0	97.0	0.0	3.55	0.86	0.64	0.81	2.49	7996	948	8	0	16	0	0	logfile
✔	7N33	24137	2021-07-02	2021-05-31	2.5	2.72	—	2.6	0.010	0.64	0.0	0.05	13.87	0.00	2.294	3.98	2.93	2.6	97.4	0.0	0.50	0.82	0.87	5.52	2.6	0.004	0.60	0.0	0.05	17.03	0.00	2.273	6.32	2.93	2.1	97.9	0.0	0.48	0.56	0.83	0.88	4.61	16524	2076	12	12	0	0	0	logfile
✔	7N0H	24106	2021-07-03	2021-05-25	3.34	3.96	—	3.6	0.004	0.59	0.0	0.05	14.62	0.00	2.156	8.26	0.00	3.8	96.2	0.0	0.29	0.84	0.83	2.11	3.6	0.002	0.50	0.0	0.04	15.70	0.00	2.162	7.45	0.17	3.3	96.7	0.0	0.70	0.41	0.84	0.83	1.78	27974	3469	25	0	64	0	0	logfile
✔	7N06	24101	2021-07-02	2021-05-25	2.2	2.33	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.004	0.56	0.0	0.05	16.52	0.00	2.058	4.01	1.13	1.2	98.8	0.0	0.36	1.24	0.84	0.89	6.21	17223	2082	21	18	0	555	0	logfile
✔	7N0G	24105	2021-07-03	2021-05-25	3.02	3.70	—	3.4	0.003	0.55	0.0	0.05	14.78	0.00	2.157	7.71	0.03	3.2	96.8	0.0	0.27	0.85	0.83	2.27	3.4	0.008	0.64	0.0	0.05	15.92	0.00	2.145	9.03	0.13	4.1	95.9	0.0	0.25	1.14	0.86	0.85	2.30	29062	3592	28	0	73	0	0	logfile
✔	7EWQ	31361	2021-07-05	2021-05-25	3.5	4.01	—	3.7	0.006	0.78	0.0	0.04	15.24	0.00	0.473	28.96	0.00	6.7	93.3	0.0	-3.42	0.74	0.69	2.12	3.8	0.003	0.77	0.0	0.04	17.16	0.00	2.116	13.10	0.50	1.9	98.1	0.0	0.90	1.15	0.76	0.74	1.21	43232	5236	28	84	0	0	0	logfile
✔	7MY2	24077	2021-07-03	2021-05-20	2.65	3.40	2.77	3.2	0.007	0.84	7.0	0.06	13.85	0.01	2.056	11.92	1.04	7.0	93.0	0.0	-2.12	0.82	0.88	3.09	3.2	0.003	0.58	0.0	0.04	14.91	0.00	2.142	8.51	1.55	4.8	95.2	0.0	-0.78	0.38	0.82	0.88	2.62	27884	3476	25	0	65	0	0	logfile
✔	7MY3	24078	2021-07-03	2021-05-20	2.9	3.76	3.03	3.4	0.010	0.77	0.0	0.05	12.90	0.00	2.108	8.33	0.00	7.1	92.9	0.0	-1.58	0.84	0.88	3.60	3.3	0.003	0.56	0.0	0.05	14.03	0.00	2.142	6.07	0.72	4.1	95.9	0.0	-0.05	0.37	0.85	0.89	2.83	26226	3385	27	0	63	0	0	logfile
✘	7ETW	31303	2021-07-01	2021-05-14	4.1	4.06	—	4.0	0.034	1.19	1.0	1.43	15.53	0.01	1.843	15.86	1.36	11.6	86.4	1.9	-5.46	0.53	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4952	680	4	0	6	0	0	logfile
✔	7oJ5	12938	2021-07-04	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.84	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.88	0.0	0.05	16.90	0.00	2.107	3.22	1.30	3.3	96.7	0.0	0.52	0.33	0.79	0.89	4.38	35323	4416	72	0	48	931	0	logfile
✔	7MSW	23970	2021-07-01	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.71	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.003	0.58	0.0	0.04	14.74	0.01	2.023	8.00	0.00	4.3	95.7	0.0	0.25	1.03	0.79	0.81	1.72	9881	635	1	0	3	0	4959	logfile
✔	7MSX	23971	2021-07-01	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.52	0.0	0.04	15.14	0.00	2.212	4.88	0.25	2.4	97.6	0.0	1.19	1.12	0.78	0.87	3.63	3706	473	1	0	3	0	0	logfile
✔	7oi3	12918	2021-07-05	2021-05-11	4.0	3.35	4.05	3.9	0.009	0.71	0.0	0.04	12.95	0.00	1.666	17.26	0.30	5.9	94.1	0.0	-2.28	0.44	0.51	—	3.8	0.003	0.62	0.0	0.04	15.86	0.01	2.086	7.98	0.38	3.7	96.3	0.0	0.09	1.04	0.52	0.66	—	47955	5910	30	90	0	0	0	logfile
✔	7oH6	12895	2021-07-02	2021-05-09	3.0	3.69	3.20	3.6	0.003	0.74	0.0	0.04	11.78	0.00	1.720	4.84	1.20	4.0	96.0	0.0	-2.49	0.65	0.74	2.83	3.6	0.003	0.62	0.0	0.04	14.44	0.01	2.011	7.61	2.08	2.8	97.1	0.1	-0.57	0.67	0.67	0.77	2.29	11552	1414	7	0	10	2	0	logfile
✔	7oH5	12894	2021-07-02	2021-05-09	2.9	3.43	2.96	3.3	0.005	0.74	0.0	0.04	10.49	0.00	1.656	5.00	1.19	4.6	95.4	0.0	-4.15	0.65	0.75	3.22	3.4	0.003	0.63	0.0	0.04	14.98	0.00	1.977	7.64	1.75	4.7	95.2	0.1	-0.73	1.25	0.69	0.78	2.57	11603	1419	8	0	14	2	0	logfile
✔	7oH7	12896	2021-07-02	2021-05-09	3.8	4.09	3.79	3.9	0.004	0.79	0.0	0.04	11.12	0.00	2.086	6.93	1.20	4.7	95.3	0.0	-3.01	0.64	0.69	1.65	3.9	0.003	0.67	0.0	0.04	14.46	0.00	2.045	13.04	0.32	3.2	96.8	0.0	-0.71	1.98	0.66	0.72	1.28	11552	1414	6	0	11	3	0	logfile
✔	7oH4	12893	2021-07-02	2021-05-09	3.0	3.58	3.12	3.4	0.002	0.69	0.0	0.04	10.76	0.00	2.021	6.46	1.36	4.0	96.0	0.0	-3.11	0.64	0.70	2.09	3.5	0.002	0.57	0.0	0.04	13.35	0.00	2.018	7.94	1.60	2.6	97.4	0.0	-0.66	1.16	0.67	0.74	1.74	11535	1414	8	0	11	3	0	logfile
✔	7oG6	12879	2021-07-01	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.59	0.0	0.04	16.62	0.00	2.231	8.00	1.22	5.6	94.4	0.0	-0.44	0.54	0.27	0.84	2.91	1602	199	2	5	0	0	0	logfile
✔	7MPE	23932	2021-07-02	2021-05-04	3.2	3.91	—	3.8	0.005	0.69	0.0	0.04	14.10	0.00	2.174	14.48	0.00	6.9	93.1	0.0	-2.52	0.62	0.77	2.09	3.8	0.003	0.64	0.0	0.04	16.15	0.00	2.174	11.64	0.25	5.4	94.6	0.0	-0.61	1.12	0.64	0.78	1.34	11214	1428	1	0	0	0	0	logfile
✔	7oF5	12870	2021-07-05	2021-05-04	2.9	3.33	2.91	3.0	0.003	0.55	0.0	0.04	14.81	0.01	1.796	4.93	0.00	3.2	96.8	0.0	1.19	0.85	0.87	3.15	3.1	0.007	0.77	0.0	0.04	17.03	0.01	1.835	14.52	2.43	4.0	96.0	0.0	0.42	1.27	0.86	0.89	2.94	102785	8829	63	1445	75	0	0	logfile

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