Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XS3	38613	2024-07-18	2024-01-08	3.46	4.59	3.46	3.9	0.005	0.77	0.0	0.05	13.19	0.02	2.090	16.27	0.00	5.0	95.0	0.0	-3.00	0.91	0.83	2.30	3.9	0.003	0.67	0.0	0.04	14.68	0.00	2.214	15.16	3.20	4.8	95.2	0.0	-0.63	1.10	0.91	0.84	2.41	4118	535	5	0	3	0	0	logfile
✔	8XS4	38614	2024-07-20	2024-01-08	3.23	3.36	3.21	3.3	0.004	0.80	0.0	0.05	13.90	0.01	2.149	11.69	0.00	7.1	92.9	0.0	-0.41	0.68	0.79	2.51	3.3	0.003	0.70	0.0	0.04	16.10	0.00	2.202	7.70	1.19	6.5	93.5	0.0	0.65	1.56	0.68	0.82	2.17	11132	1392	2	0	0	0	0	logfile
✔	8XS5	38615	2024-07-19	2024-01-08	3.33	3.40	3.21	3.3	0.011	0.88	0.0	0.05	13.49	0.01	2.081	9.41	0.00	6.7	93.2	0.1	-0.34	0.70	0.85	2.61	3.4	0.002	0.60	0.0	0.04	15.13	0.00	2.262	5.51	0.44	4.7	95.2	0.1	1.52	0.41	0.68	0.84	1.74	8705	1088	2	0	0	0	0	logfile
✔	8RMM	19364	2024-07-26	2024-01-08	3.26	3.54	3.38	3.4	0.003	0.67	0.0	0.04	14.99	0.00	2.123	11.42	0.79	4.0	96.0	0.0	0.62	0.64	0.75	2.03	3.4	0.003	0.61	0.0	0.04	15.09	0.00	2.161	10.77	1.90	4.2	95.8	0.0	1.84	0.57	0.67	0.82	1.57	32888	4163	27	0	6	0	0	logfile
✔	8XS0	38612	2024-07-20	2024-01-08	3.89	4.15	4.00	4.1	0.004	0.84	0.0	0.05	12.99	0.01	2.158	13.17	0.00	13.6	86.3	0.1	-0.93	0.67	0.80	2.30	4.0	0.003	0.75	0.0	0.04	15.31	0.00	2.113	10.72	3.25	11.5	88.4	0.1	-0.10	0.50	0.67	0.79	1.53	10353	1388	2	0	0	0	0	logfile
✔	8RMK	19362	2024-07-27	2024-01-08	3.07	3.32	3.18	3.3	0.003	0.61	0.0	0.04	15.81	0.00	2.257	12.04	0.45	4.0	96.0	0.0	1.73	0.71	0.84	2.52	3.3	0.003	0.57	0.0	0.04	15.67	0.00	2.188	7.70	2.30	2.9	97.1	0.0	2.35	0.51	0.71	0.85	2.16	36113	4521	33	0	11	0	0	logfile
✔	8XRY	38611	2024-07-20	2024-01-08	3.84	3.84	3.74	3.8	0.004	0.74	0.0	0.04	12.99	0.00	2.253	10.68	0.00	9.3	90.5	0.1	-0.26	0.68	0.81	2.38	3.8	0.004	0.71	0.0	0.04	15.27	0.00	2.159	9.97	2.14	7.7	92.2	0.1	0.41	0.39	0.68	0.82	1.29	10616	1392	2	0	0	0	0	logfile
✔	8RML	19363	2024-07-24	2024-01-08	3.84	4.20	4.01	4.1	0.004	0.60	0.0	0.04	14.77	0.00	2.198	12.94	0.46	3.7	96.3	0.0	0.77	0.65	0.79	1.28	4.1	0.002	0.58	0.0	0.04	15.73	0.00	2.099	9.65	2.85	3.1	96.9	0.0	2.20	0.49	0.64	0.77	1.00	24454	3088	13	0	0	0	0	logfile
✔	8VJC	43280	2024-07-22	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.006	0.71	0.0	0.05	16.22	0.00	2.147	17.93	2.75	9.5	90.3	0.2	-1.84	0.37	0.85	0.82	1.78	13927	1726	5	0	0	0	0	logfile
✔	8VJB	43279	2024-07-22	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.61	0.0	0.04	17.28	0.00	2.132	13.67	3.15	8.1	91.7	0.2	-1.53	1.57	0.88	0.84	1.86	14688	1824	6	0	0	0	0	logfile
✔	8ViB	43256	2024-07-18	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.72	0.0	0.04	5.08	0.00	2.217	11.42	0.00	10.9	88.4	0.7	-0.28	2.87	0.49	0.83	—	4421	888	6	0	7	0	0	logfile
✔	8Vi5	43249	2024-07-19	2024-01-03	3.2	3.48	3.25	3.5	0.003	0.49	0.0	0.04	12.93	0.00	1.764	4.66	0.00	1.5	98.5	0.0	2.79	0.63	0.85	3.44	3.5	0.003	0.53	0.0	0.04	13.99	0.00	2.239	6.54	0.78	2.1	97.9	0.0	2.35	0.87	0.59	0.85	3.10	7359	924	3	0	0	0	0	logfile
✔	8Vi4	43248	2024-07-19	2024-01-03	3.1	3.45	3.13	3.4	0.003	0.46	0.0	0.04	12.37	0.00	2.132	4.99	0.13	1.7	98.3	0.0	2.48	0.70	0.88	4.44	3.4	0.003	0.47	0.0	0.04	13.56	0.00	2.187	5.26	1.31	1.6	98.4	0.0	2.70	0.29	0.64	0.89	3.71	7359	924	3	0	0	0	0	logfile
✔	8Vi3	43247	2024-07-19	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.004	0.50	0.0	0.04	14.79	0.00	2.218	5.53	1.31	1.5	98.5	0.0	2.39	0.32	0.61	0.89	4.82	7359	924	3	0	0	0	0	logfile
✔	8Vi2	43246	2024-07-19	2024-01-03	3.1	3.54	3.18	3.5	0.003	0.48	0.0	0.04	12.42	0.00	2.029	6.59	0.00	3.7	96.3	0.0	0.67	0.62	0.86	5.04	3.5	0.003	0.53	0.0	0.04	13.63	0.00	2.202	5.71	0.52	2.3	97.7	0.0	3.43	0.64	0.56	0.85	4.31	7382	924	3	0	0	0	0	logfile
✔	8XoP	38537	2024-07-22	2024-01-02	2.8	3.94	2.89	3.5	0.005	0.69	0.0	0.04	12.47	0.01	2.120	10.63	0.00	2.0	97.9	0.0	1.41	0.85	0.87	2.82	3.5	0.004	0.79	0.0	0.04	16.17	0.01	2.166	14.16	3.47	2.6	97.4	0.0	1.55	1.29	0.86	0.89	2.75	19740	2562	28	0	14	0	0	logfile
✔	8XoT	38540	2024-07-28	2024-01-02	3.51	4.52	3.54	3.9	0.005	0.81	0.0	0.04	16.39	0.01	2.109	19.64	0.67	5.2	94.5	0.4	0.82	0.77	0.84	1.37	3.9	0.004	0.82	1.0	0.04	16.80	0.01	1.757	19.05	3.26	5.3	94.5	0.3	0.85	0.39	0.77	0.84	1.30	44532	5688	12	0	0	0	0	logfile
✔	8XoH	38529	2024-07-19	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.002	0.58	0.0	0.04	16.43	0.00	2.181	7.65	2.61	1.6	98.4	0.0	1.13	1.18	0.58	0.81	1.83	8809	1116	5	0	0	0	0	logfile
✔	8XoJ	38531	2024-07-19	2024-01-01	3.1	3.41	3.14	3.3	0.003	0.56	0.0	0.04	15.11	0.00	2.311	3.72	0.32	2.7	97.3	0.0	1.17	0.66	0.81	3.58	3.3	0.003	0.55	0.0	0.04	16.64	0.00	2.191	6.53	2.84	2.5	97.5	0.0	1.44	1.15	0.65	0.81	2.80	8785	1117	5	0	0	0	0	logfile
✔	8Xoi	38530	2024-07-19	2024-01-01	3.2	2.88	2.44	3.1	0.003	0.54	0.0	0.04	15.22	0.00	2.211	4.54	0.32	2.6	97.4	0.0	0.82	0.59	0.80	3.11	3.1	0.004	0.56	0.0	0.04	16.36	0.00	2.193	7.18	2.53	2.8	97.2	0.0	1.35	0.45	0.57	0.81	2.47	8753	1115	5	0	0	0	0	logfile

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