Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZC3	39921	2024-07-26	2024-04-28	4.69	4.15	4.72	4.3	0.004	0.69	0.0	0.05	13.97	0.01	1.984	5.12	0.16	4.0	96.0	0.0	-1.49	0.71	0.72	—	4.3	0.002	0.59	0.0	0.04	13.63	0.00	2.136	10.44	0.00	4.6	95.4	0.0	-1.06	0.51	0.72	0.76	—	33856	4282	23	0	50	0	0	logfile
✘	8ZC5	39923	2024-07-19	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6515	830	8	0	2	0	0	logfile
✔	8ZBZ	39917	2024-07-26	2024-04-28	4.71	4.57	4.74	4.4	0.003	0.69	0.0	0.05	14.17	0.01	1.945	4.88	0.11	3.8	96.2	0.0	-1.66	0.75	0.73	—	4.4	0.002	0.61	0.0	0.04	13.42	0.00	2.152	11.31	0.00	4.6	95.4	0.0	-1.14	1.40	0.76	0.77	—	33999	4282	29	0	60	0	0	logfile
✘	8ZC4	39922	2024-07-26	2024-04-28	3.95	4.08	3.89	4.1	0.004	0.71	0.0	0.05	13.87	0.01	2.224	4.81	0.03	4.9	95.1	0.0	-1.57	0.73	0.73	1.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33840	4283	24	0	48	0	0	logfile
✔	8ZBY	39916	2024-07-27	2024-04-28	3.67	3.79	3.60	3.8	0.003	0.61	0.0	0.05	12.56	0.01	2.260	4.48	0.03	2.6	97.4	0.0	-0.56	0.72	0.73	0.81	3.8	0.003	0.57	0.0	0.04	13.79	0.00	2.107	8.32	2.61	3.3	96.6	0.1	-0.10	1.43	0.76	0.81	1.56	34215	4332	24	0	48	0	0	logfile
✔	8ZC0	39918	2024-07-26	2024-04-28	4.17	4.33	4.15	4.2	0.004	0.69	0.0	0.05	13.63	0.01	2.235	4.70	0.11	4.8	95.1	0.0	-1.48	0.77	0.75	—	4.2	0.003	0.58	0.0	0.04	13.22	0.00	2.133	8.81	0.00	4.9	95.1	0.0	-0.79	0.38	0.78	0.77	—	33975	4283	30	0	57	0	0	logfile
✔	8Z9Z	39873	2024-07-20	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.004	0.50	0.0	0.04	18.42	0.00	2.201	10.16	3.77	2.6	97.4	0.0	3.26	0.25	0.61	0.79	1.35	12648	1519	8	0	6	0	0	logfile
✔	8Z9Q	39867	2024-07-21	2024-04-23	2.33	2.83	2.42	2.7	0.003	0.53	0.0	0.04	13.21	0.00	2.117	8.28	0.00	3.5	96.5	0.0	0.58	0.70	0.83	4.40	2.7	0.003	0.57	0.0	0.04	15.99	0.00	2.131	9.30	1.48	3.4	96.6	0.0	0.82	0.37	0.71	0.85	4.23	12362	1505	4	9	1	0	0	logfile
✔	8Z9R	39868	2024-07-25	2024-04-23	2.58	3.13	2.69	3.0	0.003	0.53	0.0	0.04	13.83	0.00	2.121	7.99	0.00	4.2	95.8	0.0	0.23	0.72	0.81	3.56	3.0	0.003	0.56	0.0	0.04	16.16	0.00	2.130	8.51	1.43	4.0	96.0	0.0	0.49	1.05	0.74	0.83	3.38	28075	3358	11	47	2	0	0	logfile
✔	8Z8N	39849	2024-07-21	2024-04-22	2.79	3.11	2.79	3.0	0.003	0.56	0.0	0.04	12.85	0.01	2.114	10.07	0.00	4.2	95.8	0.0	-0.39	0.75	0.84	2.78	3.0	0.005	0.69	0.0	0.04	16.10	0.00	2.046	11.15	2.14	4.6	95.4	0.0	-0.14	1.35	0.76	0.87	2.80	12485	1510	5	15	0	0	0	logfile
✔	8Z8J	39848	2024-07-21	2024-04-22	3.16	3.46	3.17	3.4	0.002	0.55	0.0	0.04	13.58	0.01	2.218	9.57	0.00	4.7	95.3	0.0	-0.26	0.79	0.87	2.49	3.4	0.004	0.59	0.0	0.04	15.31	0.00	2.200	9.75	1.60	5.0	95.0	0.0	0.07	0.38	0.81	0.90	2.50	13766	1665	5	15	0	0	0	logfile
✔	8Z90	39852	2024-07-21	2024-04-22	2.87	3.20	2.88	3.1	0.003	0.67	0.0	0.04	14.44	0.01	2.113	10.76	0.00	3.8	96.2	0.0	-0.73	0.81	0.88	3.65	3.1	0.003	0.63	0.0	0.04	16.72	0.00	2.113	11.62	1.13	4.1	95.9	0.0	0.35	1.01	0.80	0.89	3.30	13481	1575	6	35	1	0	0	logfile
✔	8Z8X	39850	2024-07-21	2024-04-22	3.06	3.36	3.12	3.3	0.003	0.61	0.0	0.04	14.96	0.01	2.148	12.31	0.00	4.9	95.1	0.0	-0.67	0.80	0.87	2.83	3.3	0.003	0.59	0.0	0.04	16.23	0.00	2.102	9.95	1.60	4.8	95.2	0.0	0.09	1.33	0.81	0.90	2.84	14768	1730	6	35	1	0	0	logfile
✔	8Z85	39838	2024-07-20	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.002	0.52	0.0	0.04	15.46	0.00	2.189	7.52	1.16	2.8	97.2	0.0	1.02	1.10	0.79	0.87	4.31	10467	1256	5	18	0	0	0	logfile
✔	9BH7	44535	2024-07-20	2024-04-19	3.5	3.43	3.54	3.6	0.003	0.64	0.0	0.04	12.66	0.01	2.370	1.58	0.00	0.7	99.2	0.1	-1.16	0.83	0.78	2.21	3.6	0.003	0.59	0.0	0.04	15.81	0.00	2.192	7.98	2.32	2.1	97.9	0.0	2.05	2.05	0.83	0.78	0.89	12166	1544	2	0	0	0	0	logfile
✔	9BH9	44537	2024-07-21	2024-04-19	3.5	3.53	3.42	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.5	0.003	0.64	0.0	0.04	17.61	0.00	2.205	7.95	1.92	2.2	97.8	0.0	0.82	1.87	0.74	0.77	1.48	13155	1574	4	50	0	0	0	logfile
✔	9BHA	44538	2024-07-21	2024-04-19	3.5	3.62	3.42	3.6	0.003	0.65	0.0	0.04	15.47	0.01	2.343	1.70	0.00	0.5	99.4	0.1	-1.83	0.72	0.77	2.78	3.6	0.006	0.73	0.0	0.04	18.04	0.00	2.164	8.91	2.20	3.1	96.9	0.0	0.32	0.81	0.74	0.79	2.13	13264	1586	4	49	0	0	0	logfile
✔	9BH8	44536	2024-07-21	2024-04-19	3.6	3.61	3.50	3.5	0.003	0.64	0.0	0.04	15.49	0.01	2.310	1.53	0.15	0.7	99.3	0.0	-2.28	0.74	0.75	2.34	3.5	0.003	0.67	0.0	0.04	17.54	0.00	2.156	9.76	1.84	2.2	97.8	0.0	0.84	1.23	0.76	0.76	1.46	13051	1574	4	44	0	0	0	logfile
✔	9BH6	44534	2024-07-24	2024-04-19	3.3	2.41	3.32	3.3	0.003	0.61	0.0	0.04	12.64	0.01	2.304	1.35	0.00	0.5	99.4	0.1	-1.51	0.84	0.81	3.48	3.3	0.002	0.56	0.0	0.04	15.22	0.00	2.193	5.66	1.38	1.5	98.5	0.0	1.76	1.36	0.85	0.81	2.26	24388	3096	4	0	0	0	0	logfile
✔	9BEi	44479	2024-07-19	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.005	0.81	0.0	0.05	14.48	0.01	2.094	30.93	0.00	11.7	88.3	0.0	-1.85	0.48	0.85	0.74	—	6649	862	5	0	0	0	0	logfile

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