Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z1E	39724	2024-07-19	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.004	0.54	0.0	0.04	15.39	0.00	2.280	5.94	3.92	1.9	98.1	0.0	2.53	0.31	0.65	0.86	1.61	6516	834	3	0	0	0	0	logfile
✔	8YZ6	39686	2024-07-24	2024-04-06	4.55	4.63	4.46	4.6	0.004	0.67	0.0	0.05	13.46	0.01	1.194	18.91	0.36	3.8	96.0	0.2	-0.97	0.50	0.60	—	4.5	0.003	0.67	0.0	0.05	13.49	0.00	2.086	16.48	0.04	5.8	94.1	0.1	-1.26	1.03	0.50	0.62	—	24972	3161	13	0	18	0	0	logfile
✔	9BBM	44422	2024-07-19	2024-04-06	3.2	3.01	3.08	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.66	0.0	0.05	16.39	0.00	2.149	7.90	1.79	8.3	90.7	0.9	-3.08	1.33	0.34	0.73	3.97	6966	444	6	0	0	0	3558	logfile
✔	8YZ5	39685	2024-07-25	2024-04-06	3.93	3.86	3.78	3.8	0.003	0.66	0.0	0.05	12.98	0.01	1.479	16.77	0.07	5.9	94.0	0.1	-1.75	0.44	0.50	0.29	3.8	0.003	0.69	0.0	0.05	15.39	0.00	2.074	18.46	2.54	6.7	93.3	0.0	-1.89	1.00	0.45	0.53	0.26	27677	3556	7	0	0	0	0	logfile
✔	9BBL	44421	2024-07-20	2024-04-06	2.5	2.33	2.51	2.6	0.011	2.11	2.0	0.10	10.02	0.01	2.489	0.19	0.00	9.7	88.9	1.4	-2.48	0.27	0.65	5.75	2.6	0.004	0.65	0.0	0.05	15.78	0.00	2.215	2.79	0.85	7.9	92.1	0.0	-2.87	0.82	0.39	0.83	5.64	10395	666	9	0	0	0	5301	logfile
✔	9EWX	50025	2024-07-23	2024-04-05	3.17	2.84	3.08	3.0	0.002	0.42	0.0	0.04	17.57	0.00	2.318	3.78	0.88	0.7	99.3	0.0	2.80	0.68	0.88	2.05	3.0	0.003	0.50	0.0	0.05	16.62	0.00	2.164	6.49	3.39	1.9	98.1	0.0	2.89	0.95	0.67	0.89	1.89	23989	3289	23	0	0	0	0	logfile
✔	9EWQ	50022	2024-07-20	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.83	1.0	0.05	15.11	0.00	2.141	6.08	2.11	3.8	96.2	0.0	-1.07	0.24	0.77	0.88	3.27	11904	1540	4	0	0	0	0	logfile
✘	9B8W	44360	2024-07-25	2024-04-01	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30256	3972	8	0	8	0	0	logfile
✘	9B8Z	44363	2024-07-19	2024-04-01	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7509	978	2	0	3	0	0	logfile
✘	9B94	44368	2024-07-25	2024-04-01	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29516	3864	8	0	4	0	0	logfile
✘	9B8Y	44362	2024-07-25	2024-04-01	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29980	3912	8	0	12	0	0	logfile
✘	9B8X	44361	2024-07-19	2024-04-01	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7564	993	2	0	2	0	0	logfile
✘	9B91	44365	2024-07-19	2024-04-01	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7511	993	2	0	3	0	0	logfile
✘	9B92	44366	2024-07-25	2024-04-01	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29948	3960	8	0	4	0	0	logfile
✘	9B90	44364	2024-07-25	2024-04-01	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29720	3928	8	0	12	0	0	logfile
✔	9B93	44367	2024-07-25	2024-04-01	3.1	3.90	2.99	3.5	0.002	0.46	0.0	0.03	15.66	0.00	2.197	6.34	0.07	2.2	97.8	0.0	1.89	0.73	0.89	2.81	3.4	0.003	0.52	0.0	0.04	15.98	0.00	2.179	7.78	2.17	2.9	97.1	0.0	2.88	0.27	0.71	0.87	2.09	29808	3936	4	0	0	0	0	logfile
✔	8YUU	39583	2024-07-19	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.002	0.54	0.0	0.04	14.19	0.00	2.132	5.74	1.33	1.9	98.1	0.1	2.08	0.57	0.66	0.83	3.40	9037	1145	6	0	2	0	0	logfile
✔	9ERM	19926	2024-07-18	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.003	0.63	0.0	0.05	16.25	0.00	2.361	3.76	1.82	2.5	97.5	0.0	-1.25	0.99	0.43	0.93	6.49	2870	375	5	0	0	0	0	logfile
✔	9ERo	19928	2024-07-19	2024-03-24	2.9	3.15	2.93	3.1	0.010	1.67	0.0	0.09	13.22	0.01	2.427	3.65	5.26	5.5	94.5	0.0	-4.12	0.48	0.85	4.87	3.1	0.006	0.85	0.0	0.05	14.93	0.00	2.196	8.57	2.41	4.1	95.9	0.0	-1.72	2.51	0.44	0.83	5.43	5775	750	10	0	0	0	0	logfile
✔	9ERN	19927	2024-07-18	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.004	0.64	0.0	0.05	16.29	0.00	2.111	2.99	0.76	0.9	99.1	0.0	-1.61	0.98	0.43	0.91	5.80	3444	450	6	0	0	0	0	logfile

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