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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8PUW | 17949 | 2024-07-20 | 2023-07-17 | 3.01 | 3.27 | 3.01 | 3.2 | 0.004 | 0.69 | 0.0 | 0.04 | 12.23 | 0.01 | 2.276 | 3.16 | 0.00 | 1.6 | 98.4 | 0.0 | 0.73 | 0.85 | 0.88 | 3.21 | 3.2 | 0.004 | 0.55 | 0.0 | 0.04 | 13.18 | 0.00 | 2.190 | 5.41 | 1.01 | 1.6 | 98.4 | 0.0 | 2.18 | 0.26 | 0.87 | 0.90 | 2.89 | 11160 | 1442 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K45 | 36877 | 2024-07-24 | 2023-07-17 | 3.66 | 4.22 | 3.69 | 3.9 | 0.005 | 0.71 | 1.0 | 0.05 | 17.55 | 0.01 | 1.989 | 10.32 | 2.13 | 7.1 | 92.4 | 0.5 | -0.91 | 0.84 | 0.86 | 1.55 | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 17.01 | 0.00 | 2.032 | 9.49 | 3.95 | 5.3 | 94.6 | 0.2 | -0.51 | 0.32 | 0.84 | 0.85 | 1.58 | 26877 | 3338 | 18 | 0 | 48 | 0 | 0 | logfile |
✔ | 8K3T | 36859 | 2024-07-20 | 2023-07-17 | 3.57 | 4.21 | 3.75 | 4.1 | 0.009 | 0.93 | 0.0 | 0.05 | 15.00 | 0.00 | 2.225 | 12.40 | 1.12 | 4.5 | 95.5 | 0.0 | 0.41 | 0.60 | 0.77 | 1.00 | 4.1 | 0.003 | 0.54 | 0.0 | 0.04 | 15.73 | 0.00 | 2.182 | 8.52 | 2.57 | 2.9 | 97.1 | 0.0 | 1.98 | 1.19 | 0.58 | 0.75 | 0.52 | 9410 | 1254 | 4 | 2 | 6 | 0 | 0 | logfile |
✘ | 8PVD | 17962 | 2024-07-22 | 2023-07-17 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16512 | 2008 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8K3Q | 36856 | 2024-07-20 | 2023-07-16 | 2.6 | 2.98 | 2.74 | 2.9 | 0.008 | 0.87 | 0.0 | 0.05 | 14.74 | 0.01 | 2.259 | 4.57 | 1.89 | 3.4 | 96.6 | 0.0 | 0.38 | 0.66 | 0.82 | 3.35 | 2.9 | 0.003 | 0.49 | 0.0 | 0.04 | 15.86 | 0.00 | 2.192 | 4.48 | 1.46 | 2.8 | 97.2 | 0.0 | 2.01 | 1.19 | 0.65 | 0.83 | 3.43 | 11365 | 1448 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8K3P | 36855 | 2024-07-20 | 2023-07-16 | 3.64 | 4.09 | 3.71 | 4.0 | 0.010 | 0.98 | 0.0 | 0.07 | 15.32 | 0.00 | 2.293 | 9.47 | 3.22 | 4.5 | 95.5 | 0.0 | 0.23 | 0.64 | 0.79 | 1.60 | 4.0 | 0.002 | 0.51 | 0.0 | 0.04 | 15.38 | 0.00 | 2.214 | 6.79 | 3.11 | 3.0 | 97.0 | 0.0 | 2.35 | 1.64 | 0.65 | 0.81 | 1.60 | 9906 | 1320 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8THi | 41265 | 2024-07-20 | 2023-07-16 | 3.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9519 | 1224 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8K3S | 36858 | 2024-07-21 | 2023-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15761 | 1864 | 8 | 0 | 17 | 0 | 0 | logfile |
✘ | 8PTY | 17925 | 2024-07-21 | 2023-07-16 | 3.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14189 | 1786 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8PU0 | 17927 | 2024-07-23 | 2023-07-16 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22416 | 2612 | 6 | 71 | 3 | 0 | 0 | logfile |
✘ | 8PTX | 17924 | 2024-07-24 | 2023-07-16 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24378 | 2852 | 7 | 75 | 7 | 0 | 0 | logfile |
✔ | 8K3R | 36857 | 2024-07-20 | 2023-07-16 | 3.51 | 4.07 | 3.61 | 3.9 | 0.008 | 0.86 | 0.0 | 0.05 | 14.85 | 0.01 | 2.259 | 4.36 | 1.92 | 2.8 | 97.2 | 0.0 | 0.53 | 0.61 | 0.73 | 1.12 | 4.0 | 0.002 | 0.61 | 0.0 | 0.04 | 15.97 | 0.00 | 2.258 | 7.84 | 1.31 | 2.8 | 97.2 | 0.0 | 1.75 | 0.84 | 0.60 | 0.77 | 0.79 | 11061 | 1404 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8THJ | 41266 | 2024-07-20 | 2023-07-16 | 2.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9642 | 1230 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 8PTW | 17879 | 2024-07-21 | 2023-07-15 | 2.91 | 3.20 | 2.93 | 3.1 | 0.004 | 0.78 | 0.0 | 0.05 | 11.31 | 0.01 | 2.299 | 3.99 | 0.00 | 1.8 | 98.2 | 0.0 | 0.35 | 0.78 | 0.81 | 3.44 | 3.1 | 0.004 | 0.59 | 0.0 | 0.04 | 13.74 | 0.01 | 2.169 | 7.21 | 0.95 | 1.6 | 98.4 | 0.0 | 2.05 | 0.35 | 0.79 | 0.84 | 2.79 | 14242 | 1878 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8K3C | 36849 | 2024-07-20 | 2023-07-15 | 2.88 | 3.12 | 2.93 | 3.1 | 0.014 | 1.17 | 0.0 | 0.07 | 10.35 | 0.01 | 2.138 | 11.02 | 0.57 | 7.8 | 92.1 | 0.1 | -3.08 | 0.48 | 0.67 | 3.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10813 | 1395 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PTP | 17877 | 2024-07-22 | 2023-07-14 | 3.0 | 3.71 | 3.06 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 16.71 | 0.00 | 2.149 | 12.13 | 0.14 | 1.7 | 98.3 | 0.0 | 0.96 | 0.88 | 0.81 | 1.18 | 3.5 | 0.003 | 0.78 | 0.0 | 0.04 | 17.19 | 0.00 | 2.195 | 13.69 | 2.44 | 2.1 | 97.9 | 0.0 | 1.03 | 0.94 | 0.87 | 0.85 | 1.14 | 19039 | 2418 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8PTG | 17870 | 2024-07-22 | 2023-07-14 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20292 | 2514 | 13 | 15 | 18 | 0 | 0 | logfile |
✔ | 8K36 | 36845 | 2024-07-21 | 2023-07-14 | 3.48 | 3.55 | 3.15 | 3.6 | 0.008 | 0.81 | 0.0 | 0.06 | 12.36 | 0.00 | 2.254 | 3.21 | 0.80 | 1.8 | 98.2 | 0.0 | -0.90 | 0.72 | 0.88 | 3.78 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 14.63 | 0.00 | 2.183 | 3.71 | 5.07 | 1.1 | 98.9 | 0.0 | -0.75 | 0.54 | 0.71 | 0.90 | 3.08 | 14172 | 1848 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8THD | 41254 | 2024-07-23 | 2023-07-14 | 3.25 | 3.59 | 3.41 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 16.15 | 0.00 | 2.107 | 8.30 | 0.43 | 3.3 | 96.7 | 0.0 | 0.17 | 0.70 | 0.80 | 1.27 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 17.14 | 0.00 | 1.964 | 10.37 | 3.73 | 3.0 | 97.0 | 0.0 | 0.95 | 1.99 | 0.74 | 0.86 | 1.64 | 20396 | 2553 | 13 | 0 | 8 | 0 | 0 | logfile |
✔ | 8PTH | 17871 | 2024-07-22 | 2023-07-14 | 2.73 | 2.59 | 2.66 | 2.8 | 0.002 | 0.44 | 0.0 | 0.04 | 17.86 | 0.00 | 2.072 | 3.02 | 1.88 | 4.8 | 95.2 | 0.0 | 0.96 | 0.74 | 0.89 | 3.83 | 2.8 | 0.002 | 0.46 | 0.0 | 0.04 | 17.83 | 0.00 | 2.082 | 3.07 | 1.67 | 4.7 | 95.3 | 0.0 | 0.90 | 0.89 | 0.73 | 0.89 | 3.88 | 18236 | 1104 | 7 | 27 | 1 | 1 | 8991 | logfile |