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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8PMJ | 17761 | 2024-07-20 | 2023-06-28 | 2.81 | 2.56 | 2.83 | 2.8 | 0.004 | 0.64 | 0.0 | 0.05 | 15.66 | 0.00 | 1.958 | 6.81 | 0.00 | 2.4 | 97.6 | 0.0 | 0.56 | 0.64 | 0.83 | 3.00 | 2.8 | 0.003 | 0.58 | 0.0 | 0.04 | 16.67 | 0.00 | 1.937 | 5.50 | 2.67 | 2.9 | 97.1 | 0.0 | 1.09 | 0.38 | 0.64 | 0.85 | 2.63 | 8985 | 1133 | 2 | 0 | 9 | 3 | 0 | logfile |
✘ | 8JUY | 36666 | 2024-07-24 | 2023-06-27 | 4.34 | 4.24 | 4.46 | 4.2 | 0.005 | 0.86 | 0.0 | 0.05 | 15.36 | 0.01 | 1.353 | 19.63 | 0.15 | 8.7 | 91.2 | 0.1 | -1.58 | 0.73 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24554 | 3069 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 8JUW | 36665 | 2024-07-24 | 2023-06-27 | 3.79 | 4.06 | 4.06 | 3.9 | 0.006 | 0.80 | 0.0 | 0.05 | 15.49 | 0.01 | 2.105 | 9.39 | 0.04 | 8.5 | 91.4 | 0.2 | -1.15 | 0.80 | 0.74 | 2.19 | 3.9 | 0.004 | 0.70 | 0.0 | 0.04 | 16.58 | 0.00 | 2.092 | 10.24 | 1.73 | 7.1 | 92.8 | 0.2 | 0.22 | 0.72 | 0.85 | 0.83 | 1.82 | 25282 | 3156 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 8TAo | 41139 | 2024-07-21 | 2023-06-27 | 2.9 | 3.35 | — | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 13.58 | 0.00 | 2.231 | 4.77 | 0.00 | 3.6 | 96.4 | 0.0 | 0.43 | 0.83 | 0.82 | 3.16 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 15.28 | 0.00 | 2.262 | 5.31 | 1.70 | 4.2 | 95.8 | 0.1 | 0.89 | 0.28 | 0.85 | 0.86 | 2.89 | 13422 | 1794 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8TAL | 41137 | 2024-07-23 | 2023-06-27 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23516 | 1448 | 4 | 0 | 9 | 0 | 11607 | logfile |
✔ | 8JUZ | 36667 | 2024-07-24 | 2023-06-27 | 4.29 | 4.11 | 4.43 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.18 | 0.00 | 2.131 | 9.33 | 0.07 | 6.6 | 93.3 | 0.1 | -0.25 | 0.66 | 0.49 | — | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 14.72 | 0.00 | 2.147 | 10.81 | 0.00 | 5.8 | 94.1 | 0.1 | 0.11 | 1.61 | 0.78 | 0.70 | — | 25274 | 3155 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8TAH | 41135 | 2024-07-21 | 2023-06-27 | 2.89 | 2.18 | 3.39 | 2.1 | 0.005 | 0.66 | 0.0 | 0.05 | 13.05 | 0.01 | 2.043 | 2.22 | 4.46 | 4.0 | 96.0 | 0.0 | -2.21 | 0.66 | 0.74 | 3.58 | 1.9 | 0.005 | 0.59 | 0.0 | 0.05 | 15.65 | 0.00 | 1.816 | 6.09 | 3.97 | 3.7 | 96.2 | 0.1 | 0.70 | 0.95 | 0.80 | 0.83 | 3.47 | 14978 | 1884 | 10 | 0 | 4 | 0 | 0 | logfile |
✘ | 8JV6 | 36669 | 2024-07-19 | 2023-06-27 | 3.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7458 | 948 | 6 | 0 | 15 | 0 | 0 | logfile |
✘ | 8TAG | 41134 | 2024-07-23 | 2023-06-27 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23516 | 1448 | 4 | 0 | 9 | 0 | 11607 | logfile |
✘ | 8JV5 | 36668 | 2024-07-19 | 2023-06-27 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7480 | 949 | 6 | 0 | 12 | 0 | 0 | logfile |
✘ | 8TAi | 41136 | 2024-07-23 | 2023-06-27 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23516 | 1448 | 4 | 0 | 9 | 0 | 11607 | logfile |
✔ | 8PM0 | 17755 | 2024-07-22 | 2023-06-27 | 2.9 | 2.60 | 2.83 | 2.8 | 0.003 | 0.48 | 0.0 | 0.04 | 19.03 | 0.00 | 1.995 | 4.79 | 2.14 | 2.3 | 97.7 | 0.0 | 0.93 | 0.75 | 0.86 | 2.76 | 2.9 | 0.002 | 0.51 | 0.0 | 0.04 | 19.09 | 0.00 | 2.199 | 6.42 | 2.25 | 1.8 | 98.2 | 0.0 | 1.00 | 0.34 | 0.75 | 0.87 | 2.75 | 16669 | 1996 | 7 | 31 | 1 | 0 | 0 | logfile |
✔ | 8TAN | 41138 | 2024-07-21 | 2023-06-27 | 3.05 | 3.69 | 3.01 | 3.4 | 0.004 | 0.77 | 0.0 | 0.05 | 13.80 | 0.00 | 2.194 | 5.98 | 2.19 | 6.7 | 93.3 | 0.0 | -1.74 | 0.81 | 0.77 | 1.64 | 3.4 | 0.004 | 0.77 | 0.0 | 0.05 | 15.71 | 0.00 | 2.154 | 17.28 | 3.11 | 8.6 | 91.4 | 0.0 | -1.12 | 1.39 | 0.82 | 0.78 | 1.96 | 13853 | 1698 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 8TA5 | 41129 | 2024-07-22 | 2023-06-26 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19775 | 1250 | 4 | 0 | 2 | 0 | 10041 | logfile |
✔ | 8TA6 | 41130 | 2024-07-18 | 2023-06-26 | 4.03 | 4.31 | 5.52 | 4.2 | 0.013 | 1.99 | 1.0 | 0.10 | 15.10 | 0.01 | 2.524 | 0.91 | 2.10 | 9.4 | 90.2 | 0.4 | -2.23 | 0.44 | 0.72 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 13.92 | 0.00 | 2.156 | 13.84 | 0.00 | 4.1 | 95.9 | 0.0 | -1.31 | 1.53 | 0.45 | 0.68 | — | 2158 | 274 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PKE | 17736 | 2024-07-18 | 2023-06-26 | 3.39 | 3.23 | 3.17 | 3.6 | 0.013 | 1.75 | 0.0 | 0.13 | 11.50 | 0.01 | 1.732 | 0.23 | 0.00 | 2.3 | 97.7 | 0.0 | -3.31 | 0.48 | 0.78 | 2.89 | 3.6 | 0.006 | 0.71 | 0.0 | 0.05 | 14.58 | 0.00 | 2.233 | 11.81 | 1.28 | 3.4 | 96.6 | 0.0 | -2.50 | 1.63 | 0.49 | 0.84 | 3.51 | 4314 | 552 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PKF | 17737 | 2024-07-18 | 2023-06-26 | 2.3673 | 1.91 | 2.30 | 2.6 | 0.013 | 1.73 | 0.0 | 0.12 | 11.30 | 0.01 | 2.355 | 0.12 | 0.00 | 2.3 | 97.7 | 0.0 | -2.77 | 0.43 | 0.75 | 4.64 | 2.6 | 0.004 | 0.63 | 0.0 | 0.05 | 16.34 | 0.00 | 2.253 | 7.31 | 2.78 | 4.9 | 95.1 | 0.0 | -2.40 | 1.95 | 0.52 | 0.84 | 4.83 | 4308 | 552 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JUN | 36662 | 2024-07-20 | 2023-06-26 | 2.38 | 2.77 | 2.52 | 2.7 | 0.007 | 1.00 | 0.0 | 0.05 | 14.89 | 0.00 | 1.983 | 7.87 | 0.00 | 4.7 | 95.3 | 0.0 | -1.69 | 0.64 | 0.81 | 3.78 | 2.7 | 0.003 | 0.54 | 0.0 | 0.04 | 16.32 | 0.00 | 1.884 | 5.76 | 1.32 | 2.3 | 97.7 | 0.0 | 0.89 | 1.23 | 0.65 | 0.84 | 3.61 | 11098 | 1356 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8PKD | 17735 | 2024-07-18 | 2023-06-26 | 2.33 | 2.42 | 2.31 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 15.00 | 0.00 | 2.246 | 3.95 | 0.00 | 2.7 | 97.3 | 0.0 | 1.55 | 0.65 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4844 | 600 | 8 | 0 | 0 | 16 | 0 | logfile |
✔ | 8PKG | 17738 | 2024-07-18 | 2023-06-26 | 2.99 | 2.16 | 2.99 | 3.3 | 0.012 | 1.65 | 0.0 | 0.12 | 10.76 | 0.01 | 2.394 | 0.12 | 0.00 | 2.3 | 97.7 | 0.0 | -3.24 | 0.52 | 0.75 | 2.62 | 3.3 | 0.003 | 0.71 | 0.0 | 0.05 | 16.76 | 0.00 | 2.208 | 10.77 | 2.14 | 2.7 | 97.3 | 0.0 | -2.43 | 0.88 | 0.49 | 0.78 | 2.85 | 4314 | 552 | 6 | 0 | 0 | 0 | 0 | logfile |