Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y7E	39013	2024-07-24	2024-02-04	4.66	8.34	13.59	40.0	0.023	1.39	0.0	0.09	15.11	0.01	2.073	10.06	3.83	3.1	96.9	0.0	-1.68	0.32	0.10	—	10.0	0.004	0.77	0.0	0.05	14.11	0.01	2.026	21.13	0.04	4.1	95.9	0.0	-0.38	2.18	0.41	0.30	—	26949	3426	19	80	4	0	0	logfile
✔	8VXC	43616	2024-07-20	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.003	0.63	0.0	0.04	17.35	0.00	2.163	13.66	1.79	3.7	96.3	0.0	0.29	0.60	0.75	0.73	1.52	9390	1139	3	22	0	0	0	logfile
✔	8Y6P	38994	2024-07-20	2024-02-03	3.9	4.26	4.01	4.1	0.004	0.90	0.0	0.05	16.87	0.01	2.064	19.68	1.34	7.1	91.8	1.1	-0.98	0.81	0.77	1.08	4.1	0.003	0.76	0.0	0.05	17.15	0.00	2.154	15.96	4.74	8.1	91.1	0.7	-1.04	2.24	0.82	0.79	1.23	9977	1228	1	0	0	0	0	logfile
✔	8Y6U	39001	2024-07-26	2024-02-03	3.97	4.45	3.93	2.8	0.003	0.57	0.0	0.04	17.75	0.00	2.200	14.50	0.00	3.5	96.5	0.0	-1.04	0.88	0.84	1.01	2.8	0.003	0.61	0.0	0.04	18.81	0.00	2.123	14.84	0.83	4.1	95.9	0.0	-0.42	1.74	0.88	0.85	1.03	33869	3953	11	137	0	0	0	logfile
✔	8VX9	43613	2024-07-20	2024-02-03	2.65	2.17	2.70	1.9	0.004	0.62	0.0	0.04	13.77	0.00	2.221	11.85	0.08	4.1	95.9	0.0	-0.43	0.74	0.70	2.71	2.0	0.005	0.71	0.0	0.05	16.57	0.01	2.175	16.26	1.51	4.8	95.2	0.0	-0.40	3.18	0.74	0.71	2.06	11244	1433	2	0	0	0	0	logfile
✔	8VXA	43615	2024-07-20	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.003	0.59	0.0	0.04	18.25	0.00	2.104	11.74	2.22	2.7	97.3	0.0	1.09	0.57	0.78	0.77	2.26	9431	1139	3	24	0	0	0	logfile
✔	8VWP	43593	2024-07-21	2024-02-02	3.21	3.46	3.23	3.5	0.012	1.50	4.0	0.09	10.39	0.01	2.359	1.40	0.00	2.2	97.6	0.2	0.79	0.77	0.84	4.06	3.5	0.004	0.61	0.0	0.05	13.48	0.00	2.265	2.38	1.22	2.8	97.2	0.0	0.34	0.49	0.76	0.89	4.18	14820	2012	8	0	4	0	0	logfile
✔	8Y65	38966	2024-07-18	2024-02-01	3.51	3.77	3.42	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.003	0.60	0.0	0.04	15.18	0.00	2.222	10.41	1.60	3.4	96.6	0.0	1.93	0.35	0.44	0.57	0.74	3565	467	2	0	1	0	0	logfile
✔	8Y66	38968	2024-07-18	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.60	0.0	0.04	16.42	0.00	2.131	8.60	4.17	2.8	97.2	0.0	1.91	0.35	0.46	0.69	1.26	3606	467	2	0	1	0	0	logfile
✔	8RV2	19522	2024-07-22	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.24	0.00	1.967	9.09	2.74	3.1	96.8	0.0	0.57	0.35	0.78	0.82	1.88	17248	2178	10	0	9	0	0	logfile
✔	8VUZ	43545	2024-07-19	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.71	0.0	0.04	17.50	0.00	2.080	14.58	6.85	7.0	92.9	0.1	0.04	0.40	0.78	0.85	1.79	6626	869	4	0	0	0	0	logfile
✔	8VV3	43548	2024-07-20	2024-01-30	2.61	2.94	2.71	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.004	0.62	0.0	0.04	16.90	0.00	2.192	11.99	4.81	4.7	95.3	0.0	2.57	1.16	0.59	0.75	2.16	12172	1548	8	0	4	0	0	logfile
✔	8VUW	43542	2024-07-21	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.55	0.0	0.04	16.59	0.00	2.155	9.66	1.15	4.1	95.9	0.0	-0.52	0.35	0.64	0.82	3.24	13055	1560	10	0	5	0	0	logfile
✔	8RU0	19501	2024-07-20	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.004	0.57	0.0	0.05	16.36	0.00	1.984	6.62	1.93	3.3	96.6	0.1	0.40	1.31	0.63	0.83	2.13	11660	1476	8	0	11	0	0	logfile
✔	8RU2	19503	2024-07-21	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.61	0.0	0.04	18.22	0.00	1.991	11.11	3.17	3.9	96.0	0.2	0.33	1.33	0.72	0.76	0.69	14773	1849	8	0	6	0	0	logfile
✔	8VUE	43529	2024-07-25	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.94	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.002	0.62	0.0	0.04	16.01	0.00	2.158	9.33	2.37	3.2	96.8	0.0	0.13	1.71	0.78	0.83	2.27	21501	2754	15	0	3	0	0	logfile
✔	8RTT	19496	2024-07-22	2024-01-29	3.56	3.72	3.51	3.6	0.004	0.52	0.0	0.04	16.49	0.00	1.317	5.80	0.20	2.2	97.8	0.0	0.18	0.79	0.85	1.76	3.6	0.005	0.80	1.0	0.05	16.81	0.00	1.842	8.37	2.15	2.9	97.1	0.0	0.85	0.38	0.79	0.87	1.77	18155	2274	16	0	14	0	0	logfile
✔	8RT9	19483	2024-07-22	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.004	0.67	0.0	0.04	16.61	0.00	2.183	11.60	2.21	1.9	98.1	0.0	3.05	0.72	0.71	0.88	2.63	17866	2395	10	0	0	0	0	logfile
✔	8RT4	19478	2024-07-27	2024-01-25	2.46	3.75	2.46	3.2	0.008	0.67	0.0	0.05	12.45	0.00	2.224	5.56	0.00	2.3	97.7	0.0	0.59	0.81	0.89	4.39	3.2	0.006	0.77	0.0	0.04	14.50	0.00	2.175	10.31	1.43	1.8	98.2	0.0	0.82	0.73	0.78	0.89	3.46	38458	5054	42	0	0	0	0	logfile
✔	8RTB	19485	2024-07-21	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.005	0.82	0.0	0.05	16.06	0.00	2.078	19.87	2.74	5.1	94.9	0.0	-0.17	2.55	0.70	0.84	1.17	14132	1804	9	0	0	0	0	logfile

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