Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WDV	37466	2024-07-24	2023-09-16	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26261	2585	98	0	111	354	0	logfile
✘	6ET5	3951	2024-07-26	2017-10-25	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31994	3492	92	0	75	0	0	logfile
✘	8BQW	16189	2024-07-22	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	8AXK	15700	2024-07-28	2022-08-31	4.05	4.12	3.79	4.1	0.002	0.46	0.0	0.04	10.52	0.00	2.167	6.25	3.27	5.0	95.0	0.0	3.62	0.41	0.83	—	4.1	0.003	0.69	0.0	0.04	13.13	0.00	2.130	10.23	0.10	5.4	94.6	0.0	2.92	1.58	0.41	0.83	—	44141	5608	85	0	0	0	0	logfile
✔	8DVD	27735	2024-07-23	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	24.44	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.005	0.91	0.0	0.05	13.25	0.00	2.168	14.87	0.00	9.9	90.0	0.1	-1.49	1.77	0.84	0.81	—	20804	2137	83	0	302	0	0	logfile
✔	7JSV	22460	2024-07-23	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	14.87	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.003	0.79	0.0	0.04	16.61	0.00	2.122	12.42	2.67	1.2	98.8	0.0	2.42	0.88	0.64	0.83	2.97	22140	2706	82	0	41	0	0	logfile
✔	6CDi	7460	2024-07-26	2018-02-08	3.6	3.90	—	3.6	0.008	1.06	0.0	0.10	16.87	0.01	1.461	7.85	0.45	5.9	94.0	0.1	-3.25	0.84	0.84	2.59	3.6	0.003	0.84	0.0	0.05	13.54	0.00	2.086	10.78	2.77	6.7	93.3	0.0	-0.89	1.76	0.85	0.86	2.47	32763	3843	81	0	210	0	0	logfile
✔	6CDE	7459	2024-07-26	2018-02-08	3.8	4.08	—	3.9	0.008	1.11	0.0	0.10	17.58	0.01	1.655	8.88	0.21	6.0	94.0	0.0	-3.29	0.77	0.84	3.13	3.9	0.005	0.74	0.0	0.05	13.46	0.00	2.095	10.47	2.49	5.1	94.9	0.0	-1.23	0.68	0.78	0.86	2.81	32973	3846	81	0	222	0	0	logfile
✔	6oSY	20189	2024-07-26	2019-05-02	4.3	4.54	4.35	4.4	0.014	1.52	0.0	0.09	20.54	0.01	2.290	6.39	2.64	9.6	90.4	0.0	-3.58	0.77	0.83	—	4.4	0.004	0.81	0.0	0.05	13.79	0.00	2.140	15.07	0.03	7.6	92.4	0.0	-1.65	0.67	0.77	0.82	—	32463	3834	78	0	186	0	0	logfile
✔	6NF2	9359	2024-07-26	2018-12-18	3.7	4.23	3.72	4.0	0.009	1.27	0.0	0.07	21.01	0.01	2.242	6.24	0.45	6.2	93.7	0.2	-2.90	0.81	0.85	2.53	4.0	0.004	0.77	0.0	0.05	15.15	0.00	2.035	12.95	2.39	6.4	93.6	0.0	-0.95	0.66	0.81	0.85	2.42	32604	3867	78	0	186	0	0	logfile
✘	7VRJ	32100	2024-07-25	2021-10-23	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26309	2604	77	0	114	48	0	logfile
✔	6oT1	20191	2024-07-26	2019-05-02	3.5	4.13	3.54	3.9	0.007	1.01	0.0	0.06	18.25	0.01	2.015	6.65	0.72	8.9	91.1	0.0	-4.15	0.80	0.85	2.29	3.9	0.003	0.71	0.0	0.05	15.41	0.00	2.153	11.29	3.26	6.7	93.3	0.0	-2.00	1.20	0.80	0.85	2.06	32247	3867	75	0	156	0	0	logfile
✘	8B3Q	15833	2024-07-24	2022-09-16	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.09	—	—	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	6.31	—	—	—	-0.31	25095	3395	75	0	0	0	0	logfile
✘	6Z5R	11080	2024-07-24	2020-05-27	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25048	2336	72	0	105	3	0	logfile
✘	8CPT	16785	2024-07-26	2023-03-03	1.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36024	4152	72	0	38	1906	0	logfile
✘	8CPS	16784	2024-07-26	2023-03-03	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36034	4152	72	0	38	1916	0	logfile
✔	6UDJ	20739	2024-07-24	2019-09-19	2.5	2.60	2.46	2.6	0.010	1.16	0.0	0.07	18.53	0.01	2.252	3.11	0.41	4.1	95.8	0.1	-1.93	0.71	0.85	4.78	2.6	0.003	0.66	0.0	0.05	15.29	0.00	2.123	6.70	2.82	3.5	96.5	0.0	-0.10	0.42	0.71	0.86	4.35	26592	3090	72	0	177	45	0	logfile
✘	6NC3	0434	2024-07-27	2018-12-10	4.5	5.02	4.53	4.5	0.020	1.83	0.0	0.11	16.39	0.01	2.381	0.92	0.15	3.1	96.5	0.4	0.08	0.77	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38904	4686	72	0	162	0	0	logfile
✘	7VD8	31910	2024-07-27	2021-09-06	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38201	4128	72	0	329	2472	0	logfile
✘	7ZG7	14705	2024-07-27	2022-04-02	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39086	4128	72	0	382	2680	0	logfile

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