Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FRS	29406	2024-07-26	2023-01-08	3.96	3.29	3.03	3.2	0.002	0.54	0.0	0.04	14.45	0.00	2.208	5.19	0.00	7.1	92.6	0.3	-1.68	0.40	0.86	3.34	3.2	0.002	0.56	0.0	0.04	15.83	0.00	2.205	5.62	1.14	7.6	92.2	0.2	-1.61	0.29	0.41	0.87	2.85	31497	4120	14	0	0	0	0	logfile
✔	8WNU	37673	2024-07-21	2023-10-06	3.8	4.07	3.82	4.1	0.003	0.58	0.0	0.04	15.01	0.00	1.960	9.85	0.13	8.0	91.8	0.2	-1.09	0.69	0.63	0.95	4.1	0.005	0.97	0.0	0.05	16.83	0.00	2.053	15.60	4.17	9.4	90.4	0.2	-1.55	1.19	0.71	0.72	1.07	14152	1824	10	0	2	0	0	logfile
✔	8iXK	35794	2024-07-21	2023-04-01	3.3	3.43	3.25	3.4	0.005	0.71	0.0	0.04	12.45	0.00	2.310	4.15	0.65	2.9	97.1	0.0	4.29	0.77	0.86	2.56	3.4	0.003	0.48	0.0	0.03	14.98	0.00	2.232	6.09	1.43	1.3	98.7	0.0	4.69	0.37	0.76	0.87	2.16	14790	1950	25	0	0	0	0	logfile
✔	5KYH	8298	2024-07-27	2016-07-21	4.0	3.99	—	4.2	0.014	1.82	0.0	0.11	11.44	0.01	1.692	34.34	3.90	2.5	96.2	1.3	-0.68	0.47	0.78	—	4.1	0.004	0.75	0.0	0.05	14.95	0.00	2.087	10.82	3.04	5.2	94.8	0.0	0.23	1.71	0.47	0.79	—	38892	5082	21	0	0	0	0	logfile
✔	6iUG	9734	2024-07-21	2018-11-28	3.9	3.96	—	3.8	0.005	0.90	0.0	0.05	10.73	0.01	2.105	7.72	0.96	8.4	91.6	0.0	-3.83	0.72	0.83	1.84	3.8	0.004	0.77	0.0	0.05	14.15	0.00	1.911	16.28	1.41	8.9	91.1	0.0	-0.62	0.76	0.72	0.84	1.73	14585	1855	10	0	10	0	0	logfile
✔	7P65	13218	2024-07-18	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.01	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.008	0.71	0.0	0.05	15.63	0.00	2.295	5.79	0.84	3.7	96.3	0.0	-2.90	0.47	0.48	0.88	5.24	4145	550	5	0	0	0	0	logfile
✔	7P67	13220	2024-07-19	2021-07-15	3.1	3.08	2.94	3.2	0.007	1.06	0.0	0.09	11.98	0.00	2.338	3.61	0.00	4.7	95.3	0.0	-3.19	0.49	0.83	4.12	3.1	0.003	0.64	0.0	0.05	14.87	0.00	2.130	10.10	2.58	5.5	94.5	0.0	-3.27	2.47	0.43	0.84	4.54	8120	1080	10	0	0	0	0	logfile
✔	8BGV	16039	2024-07-18	2022-10-28	3.27	3.26	3.18	3.4	0.009	1.72	0.0	0.10	12.41	0.01	2.452	0.84	1.49	6.7	93.3	0.0	-3.78	0.46	0.89	5.03	3.3	0.005	0.73	0.0	0.05	13.32	0.00	2.275	4.07	0.85	3.8	96.2	0.0	-2.53	1.30	0.41	0.87	3.65	4109	539	7	0	0	0	0	logfile
✔	6i3N	4405	2024-07-20	2018-11-06	3.1	3.19	2.96	3.2	0.007	1.05	0.0	0.05	11.33	0.01	2.410	3.63	0.00	7.9	92.1	0.0	-5.28	0.58	0.82	1.77	3.2	0.004	0.63	0.0	0.04	17.05	0.00	2.121	7.85	2.21	5.2	94.8	0.0	1.95	1.32	0.60	0.86	0.98	10660	1339	13	0	0	0	0	logfile
✔	6DJM	7936	2024-07-20	2018-05-25	3.1	3.26	—	3.2	0.010	1.01	0.0	0.06	11.49	0.01	2.069	3.69	0.00	4.2	95.8	0.0	-4.16	0.67	0.84	3.65	3.2	0.003	0.57	0.0	0.04	15.39	0.00	1.940	7.89	1.59	4.0	96.0	0.0	-0.27	1.25	0.68	0.86	2.77	11768	1488	12	0	8	4	0	logfile
✔	8BG9	16027	2024-07-18	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.1	0.006	0.75	0.0	0.05	15.46	0.00	2.209	7.60	7.74	10.0	90.0	0.0	-4.00	0.95	0.37	0.80	5.44	1692	222	6	0	0	0	0	logfile
✘	8D9M	27266	2024-07-21	2022-06-10	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15967	1806	14	0	56	0	0	logfile
✔	7Q64	13851	2024-07-19	2021-11-05	2.76	2.81	2.66	2.9	0.014	1.34	0.0	0.09	10.20	0.01	2.276	7.23	3.83	8.3	91.7	0.0	-6.01	0.58	0.78	3.39	2.8	0.005	1.25	1.0	0.05	14.68	0.00	2.155	12.46	6.17	5.3	94.7	0.0	-5.67	0.74	0.59	0.86	3.75	7810	1100	30	0	0	0	0	logfile
✔	5YRN	6842	2024-07-19	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.7	0.004	0.87	0.0	0.05	14.72	0.00	2.096	25.75	0.00	3.6	96.4	0.0	-0.90	3.00	0.64	0.81	—	8280	1044	12	0	0	0	0	logfile
✔	8iC0	35351	2024-07-20	2023-02-10	3.41	3.75	3.43	3.8	0.003	0.55	0.0	0.04	13.84	0.00	2.163	8.36	0.10	4.3	95.7	0.0	-1.57	0.64	0.75	2.29	3.8	0.002	0.59	0.0	0.04	16.02	0.00	2.107	9.78	2.04	3.6	96.4	0.0	-0.73	0.42	0.61	0.74	1.76	9553	1228	6	0	0	0	0	logfile
✔	6WL0	21814	2024-07-20	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.004	0.94	0.0	0.04	14.24	0.00	2.078	18.82	0.18	0.1	99.9	0.0	0.62	1.63	0.79	0.86	—	11480	1476	41	0	0	0	0	logfile
✔	8oVX	17225	2024-07-19	2023-04-26	3.4	4.18	3.32	3.7	0.004	0.98	0.0	0.05	13.53	0.00	2.209	6.80	0.00	4.8	95.2	0.0	-1.04	0.80	0.70	1.05	3.8	0.003	0.73	0.0	0.04	15.86	0.00	2.094	16.38	2.99	4.8	95.2	0.0	0.84	0.65	0.82	0.72	1.17	6763	885	6	0	0	0	0	logfile
✔	7Xo0	33332	2024-07-18	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.005	0.49	0.0	0.05	17.10	0.00	2.237	6.29	2.71	9.2	90.8	0.0	-2.93	0.30	0.47	0.88	6.95	2550	372	6	0	0	0	0	logfile
✘	8ZJF	60143	2024-07-20	2024-05-14	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10917	1419	4	0	6	0	0	logfile
✔	8BYN	16329	2024-07-18	2022-12-13	2.6	2.60	2.45	2.5	0.009	0.79	0.0	0.05	14.76	0.00	2.417	6.44	0.00	1.4	98.6	0.0	-1.93	0.45	0.92	7.24	2.5	0.004	0.54	0.0	0.05	18.31	0.00	2.270	3.36	1.26	1.4	98.6	0.0	-1.66	0.43	0.43	0.93	6.51	3564	450	10	0	6	0	0	logfile

• ← previous
• Page 2 of 579
• next →