Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9KMJ	62435	2025-07-24	2024-11-16	3.1	3.32	3.08	3.3	0.006	0.88	0.0	0.05	13.75	0.01	2.251	6.35	0.00	4.0	96.0	0.0	-1.43	0.62	0.82	2.98	3.3	0.003	0.58	0.0	0.04	15.04	0.00	2.277	9.95	1.23	3.1	96.9	0.0	0.89	0.87	0.61	0.83	2.53	6019	762	4	0	4	1	0	logfile
✔	9HEL	52080	2025-07-28	2024-11-14	3.1	2.44	3.09	2.2	0.003	0.68	0.0	0.05	17.02	0.02	2.117	8.04	0.35	5.0	95.0	0.0	-1.30	0.74	0.78	2.39	2.2	0.004	0.68	0.0	0.05	16.78	0.00	2.264	6.43	4.61	4.7	95.3	0.0	-1.04	0.89	0.75	0.79	2.13	10616	1382	7	0	18	0	0	logfile
✔	9KLP	62412	2025-07-30	2024-11-14	2.87	3.52	3.12	3.4	0.007	0.64	0.0	0.05	18.92	0.01	1.830	4.17	0.00	4.4	95.5	0.1	0.59	0.77	0.86	2.72	3.4	0.003	0.55	0.0	0.04	19.78	0.00	1.663	3.58	0.72	3.4	96.5	0.1	1.05	0.32	0.74	0.83	2.20	12569	1268	6	129	6	0	0	logfile
✔	9KLN	62410	2025-07-31	2024-11-14	2.55	3.08	2.69	3.0	0.007	0.88	0.0	0.08	21.24	0.02	2.042	7.78	2.00	4.1	95.9	0.1	0.73	0.74	0.86	2.68	3.0	0.002	0.55	0.0	0.03	20.70	0.00	1.967	4.61	1.72	2.9	97.1	0.0	1.53	1.31	0.72	0.85	2.97	13749	1385	5	145	2	8	0	logfile
✔	9KLQ	62413	2025-07-31	2024-11-14	3.11	3.67	3.25	3.5	0.006	0.70	0.0	0.05	19.05	0.01	1.956	7.43	0.00	5.2	94.6	0.2	0.18	0.76	0.82	2.30	3.5	0.003	0.53	0.0	0.03	19.84	0.00	1.949	4.57	1.22	5.2	94.8	0.1	0.96	0.35	0.77	0.83	2.22	13055	1284	5	148	2	0	0	logfile
✔	9KJC	62366	2025-07-27	2024-11-12	3.6	3.85	3.65	3.8	0.003	0.68	0.0	0.04	14.66	0.01	2.206	9.65	0.63	7.7	92.3	0.0	-0.15	0.64	0.77	0.95	3.8	0.003	0.68	0.0	0.04	15.96	0.00	2.461	8.88	1.47	7.8	92.2	0.0	0.15	0.53	0.64	0.80	0.56	9015	1168	2	0	1	0	0	logfile
✔	9KK6	62383	2025-07-27	2024-11-12	3.7	3.82	3.73	3.8	0.003	0.62	0.0	0.04	15.11	0.00	2.031	8.58	0.00	9.0	91.0	0.0	1.23	0.65	0.80	1.71	3.8	0.003	0.67	0.0	0.04	17.39	0.00	1.926	7.75	2.20	8.4	91.6	0.0	1.08	0.47	0.65	0.81	1.45	9066	1170	2	0	6	0	0	logfile
✔	9KJU	62377	2025-07-25	2024-11-12	2.7	2.86	2.87	2.8	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.57	0.64	1.90	2.8	0.003	0.71	0.0	0.04	14.95	0.00	2.498	5.92	1.79	7.8	92.1	0.1	1.08	0.68	0.68	0.88	1.58	7398	936	8	0	8	1	0	logfile
✘	9HDo	52070	2025-07-28	2024-11-12	2.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1025	8	86	2	0	0	logfile
✘	9HDP	52071	2025-07-28	2024-11-12	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1025	8	86	2	0	0	logfile
✘	9HDR	52073	2025-07-30	2024-11-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12202	1263	8	86	2	0	0	logfile
✔	9HDQ	52072	2025-07-28	2024-11-12	2.45	2.20	2.50	2.4	0.007	1.15	0.0	0.09	19.15	0.01	2.353	1.10	0.00	0.4	99.6	0.0	-1.18	0.66	0.81	4.58	2.3	0.003	0.58	0.0	0.04	20.18	0.00	2.604	2.90	0.74	1.9	98.1	0.0	1.97	3.97	0.68	0.82	3.40	10261	1025	8	85	1	0	0	logfile
✔	9HDD	52061	2025-07-30	2024-11-12	3.62	5.09	3.72	4.0	0.011	1.80	0.0	0.08	14.69	0.01	2.527	1.51	0.14	4.4	95.6	0.0	-2.50	0.88	0.77	-0.32	4.1	0.002	0.58	0.0	0.03	16.21	0.00	2.336	6.61	1.52	1.6	98.0	0.4	3.76	0.96	0.87	0.77	-0.32	12556	818	2	0	0	0	6260	logfile
✔	9EAL	47835	2025-07-29	2024-11-11	2.83	3.36	2.95	3.2	0.005	0.90	0.0	0.07	19.86	0.01	2.220	5.07	0.81	3.6	96.4	0.0	-1.36	0.78	0.81	2.94	3.2	0.003	0.58	0.0	0.04	20.40	0.00	2.517	5.69	2.02	3.3	96.7	0.0	0.74	0.62	0.80	0.85	3.14	11438	1156	4	143	0	0	0	logfile
✔	9EAH	47831	2025-07-24	2024-11-11	3.1	3.37	3.11	3.3	0.002	0.45	0.0	0.04	10.95	0.00	2.254	5.72	0.68	3.6	96.4	0.0	-0.11	0.55	0.82	4.02	3.3	0.003	0.50	0.0	0.04	13.40	0.00	2.591	5.45	1.19	4.4	95.6	0.0	1.09	0.87	0.55	0.82	3.18	5606	702	5	0	2	0	0	logfile
✔	9EAi	47832	2025-07-24	2024-11-11	3.1	3.42	3.09	3.4	0.003	0.51	0.0	0.04	10.65	0.00	2.233	6.30	1.37	2.1	97.9	0.0	0.13	0.58	0.83	3.53	3.4	0.002	0.49	0.0	0.04	12.97	0.00	2.558	4.77	2.91	2.4	97.6	0.0	0.76	0.25	0.57	0.83	2.70	5554	687	5	0	4	0	0	logfile
✔	9EAQ	47840	2025-07-29	2024-11-11	2.7	2.85	2.72	2.9	0.002	0.57	0.0	0.04	17.47	0.01	2.279	4.57	4.09	4.8	95.0	0.1	-0.81	0.36	0.78	2.28	2.9	0.003	0.63	0.0	0.05	17.36	0.01	2.432	3.71	3.38	5.0	94.8	0.1	-0.84	0.22	0.35	0.84	2.68	11799	1535	3	0	0	0	0	logfile
✔	9EAP	47839	2025-07-30	2024-11-11	2.7	2.81	2.69	2.9	0.004	0.73	0.0	0.04	18.58	0.00	2.148	8.42	4.25	7.9	92.0	0.1	-1.48	0.19	0.54	0.99	2.8	0.003	0.67	0.0	0.05	17.28	0.01	2.409	5.29	2.68	6.2	93.7	0.1	-1.37	1.86	0.36	0.84	2.79	11883	1534	6	0	3	0	0	logfile
✔	9EAo	47838	2025-07-29	2024-11-11	2.6	2.87	2.56	2.9	0.003	0.62	0.0	0.05	17.27	0.01	2.103	4.31	5.19	5.6	94.2	0.2	-1.14	0.41	0.83	3.50	2.9	0.004	0.70	0.0	0.05	17.26	0.01	2.324	3.50	3.93	5.3	94.5	0.2	-1.02	0.19	0.38	0.84	3.38	11798	1534	6	0	3	0	0	logfile
✔	9EAN	47837	2025-07-29	2024-11-11	2.4	2.52	2.43	4.8	0.006	0.84	0.0	0.05	17.82	0.01	2.091	5.34	2.75	5.5	94.3	0.2	-0.84	0.03	-0.02	0.66	2.5	0.004	0.79	0.0	0.05	17.78	0.01	2.399	5.29	2.12	5.6	94.3	0.1	-0.95	1.40	0.36	0.82	3.02	11798	1535	3	0	0	0	0	logfile

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