Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EAK	47834	2025-07-30	2024-11-11	2.76	3.29	2.83	3.1	0.005	0.80	0.0	0.05	20.18	0.01	2.229	4.47	0.61	4.6	95.4	0.0	-0.95	0.80	0.88	3.97	3.2	0.004	0.57	0.0	0.04	20.39	0.00	2.503	4.43	2.54	3.7	96.3	0.0	0.92	0.45	0.81	0.89	4.10	12879	1356	5	149	1	0	0	logfile
✔	9EAN	47837	2025-07-29	2024-11-11	2.4	2.52	2.43	4.8	0.006	0.84	0.0	0.05	17.82	0.01	2.091	5.34	2.75	5.5	94.3	0.2	-0.84	0.03	-0.02	0.66	2.5	0.004	0.79	0.0	0.05	17.78	0.01	2.399	5.29	2.12	5.6	94.3	0.1	-0.95	1.40	0.36	0.82	3.02	11798	1535	3	0	0	0	0	logfile
✔	9KHH	62340	2025-07-30	2024-11-10	3.65	4.57	3.59	3.6	0.003	0.67	0.0	0.05	13.84	0.00	1.714	4.27	0.62	4.2	95.8	0.0	0.38	0.65	0.68	1.44	3.7	0.003	0.70	0.0	0.04	14.53	0.00	2.377	9.73	2.46	4.6	95.4	0.0	0.81	1.53	0.68	0.79	2.23	12354	1871	6	0	0	0	0	logfile
✔	9E9X	47820	2025-07-23	2024-11-09	3.2	2.99	3.14	3.2	0.005	0.94	0.0	0.07	16.56	0.00	2.294	13.93	0.00	8.4	91.6	0.0	-3.29	0.40	0.69	2.71	3.1	0.003	0.61	0.0	0.05	17.90	0.00	2.605	9.98	7.00	6.4	93.6	0.0	-3.11	0.53	0.40	0.71	2.63	3143	450	9	0	16	0	0	logfile
✔	9KH5	62332	2025-07-23	2024-11-09	3.74	4.67	2.98	4.3	0.008	0.98	0.0	0.04	17.15	0.01	2.202	28.14	8.97	13.0	87.0	0.0	-4.34	0.48	0.79	0.82	4.3	0.004	0.90	0.0	0.05	16.56	0.01	2.477	16.24	4.75	7.3	92.7	0.0	-0.05	2.17	0.48	0.81	0.82	3526	455	1	0	0	0	0	logfile
✘	9HBW	52032	2025-07-28	2024-11-08	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10702	1259	8	54	0	0	0	logfile
✘	9HBV	52031	2025-07-24	2024-11-08	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5405	629	5	30	0	0	0	logfile
✘	9HBY	52034	2025-07-25	2024-11-08	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7976	951	7	35	0	0	0	logfile
✘	9HBT	52029	2025-07-31	2024-11-08	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13327	1581	10	60	0	0	0	logfile
✘	9HBS	52028	2025-07-29	2024-11-08	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11044	1252	6	74	0	0	0	logfile
✘	9HBX	52033	2025-07-24	2024-11-08	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5261	630	5	22	0	0	0	logfile
✘	9HBU	52030	2025-07-24	2024-11-08	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5530	629	4	37	0	0	0	logfile
✔	9KGK	62321	2025-07-25	2024-11-08	2.63	3.53	2.71	3.4	0.003	0.61	0.0	0.04	12.01	0.00	2.142	7.96	0.00	5.4	94.6	0.0	0.06	0.71	0.81	2.70	3.4	0.003	0.69	0.0	0.04	14.51	0.00	2.501	7.89	1.08	6.3	93.7	0.0	-0.08	1.13	0.65	0.78	2.74	7556	973	3	0	0	0	0	logfile
✘	9HBR	52027	2025-07-24	2024-11-08	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5236	625	5	22	0	0	0	logfile
✔	9KG1	62305	2025-07-31	2024-11-07	2.9	2.93	2.92	3.3	0.004	0.77	0.0	0.05	13.84	0.00	1.845	26.05	3.31	15.9	83.9	0.1	-4.58	0.45	0.40	0.54	3.3	0.003	0.80	0.0	0.04	17.68	0.00	2.449	17.22	4.48	9.1	90.8	0.1	-3.53	1.56	0.52	0.49	0.81	13853	1694	7	0	0	0	0	logfile
✔	9KG2	62306	2025-07-27	2024-11-07	4.1	4.34	4.18	4.3	0.003	0.61	0.0	0.04	14.83	0.00	2.211	10.37	0.00	6.2	93.7	0.1	0.32	0.64	0.79	—	4.3	0.003	0.63	0.0	0.04	14.99	0.00	2.447	8.82	0.00	6.9	93.0	0.1	0.38	0.37	0.65	0.79	—	8964	1166	1	0	0	0	0	logfile
✔	9HBB	52014	2025-07-25	2024-11-06	3.0	3.19	2.92	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.003	0.55	0.0	0.05	15.44	0.00	2.470	1.41	1.52	3.2	96.8	0.0	-1.56	1.40	0.43	0.85	4.86	7074	456	6	0	0	0	3606	logfile
✔	9E91	47739	2025-07-24	2024-11-06	3.31	2.33	3.27	2.1	0.008	0.89	0.0	0.05	14.86	0.01	2.243	10.73	1.47	12.0	88.0	0.0	-2.13	0.71	0.69	2.19	2.1	0.004	0.67	0.0	0.04	16.52	0.00	2.518	11.13	1.76	10.6	89.4	0.0	-1.27	0.54	0.72	0.70	2.12	6238	782	4	0	2	0	0	logfile
✔	9E90	47738	2025-07-28	2024-11-06	3.45	2.43	3.48	2.2	0.007	0.75	0.0	0.05	13.39	0.00	2.076	8.96	0.00	11.7	88.1	0.2	-1.68	0.71	0.68	2.06	2.2	0.003	0.72	0.0	0.04	16.41	0.00	2.355	7.91	2.03	10.6	89.3	0.2	-1.05	0.72	0.73	0.72	1.70	9672	1222	5	0	3	0	0	logfile
✔	9HB3	52012	2025-07-25	2024-11-05	2.5	2.13	—	2.0	0.004	0.65	0.0	0.04	10.96	0.00	2.545	8.51	0.95	2.9	97.1	0.0	0.93	0.62	0.50	1.68	1.6	0.003	0.70	0.0	0.04	15.40	0.00	2.444	9.72	2.98	4.7	95.3	0.0	0.49	1.30	0.70	0.64	1.31	7139	951	5	0	0	0	0	logfile

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