Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9E82	47700	2025-07-26	2024-11-04	3.4	3.55	3.27	3.5	0.003	0.53	1.0	0.04	9.81	0.00	2.068	10.34	3.04	7.2	92.8	0.0	-0.53	0.57	0.63	1.07	3.5	0.004	0.80	0.0	0.05	13.72	0.01	2.323	13.32	4.45	5.4	94.6	0.0	-0.50	1.38	0.58	0.64	1.07	8200	1034	6	0	1	0	0	logfile
✔	9KDF	62274	2025-07-26	2024-11-03	3.3	2.46	—	2.9	0.007	0.74	0.0	0.04	14.53	0.01	1.213	10.13	0.25	4.1	95.9	0.0	0.94	0.68	0.63	1.43	2.1	0.003	0.69	0.0	0.04	17.20	0.00	1.168	10.40	3.24	4.7	95.3	0.0	1.37	0.55	0.70	0.67	1.04	7399	917	5	0	7	0	0	logfile
✔	9KDG	62275	2025-07-26	2024-11-03	3.33	3.31	3.36	3.5	0.007	0.68	0.0	0.04	14.75	0.01	2.035	5.75	0.00	3.2	96.8	0.0	0.37	0.46	0.71	2.78	3.5	0.003	0.60	0.0	0.04	16.79	0.00	1.957	5.61	1.64	3.8	96.2	0.0	1.28	0.46	0.48	0.74	1.94	7292	907	4	0	7	0	0	logfile
✔	9E7J	47678	2025-07-23	2024-11-01	2.98	3.23	2.97	3.3	0.011	0.90	0.0	0.05	14.35	0.00	2.493	11.05	0.00	2.8	97.2	0.0	-0.61	0.60	0.76	3.17	3.2	0.004	0.62	0.0	0.04	16.04	0.00	2.665	10.07	0.95	0.0	100.0	0.0	2.97	0.41	0.58	0.77	2.79	3112	440	4	0	0	0	0	logfile
✔	9KBH	62225	2025-07-31	2024-10-30	3.3	3.63	3.49	3.5	0.006	0.76	0.0	0.04	16.26	0.00	2.103	5.77	0.76	6.7	92.8	0.5	0.26	0.76	0.83	1.57	3.5	0.003	0.56	0.0	0.04	15.93	0.00	1.901	4.30	1.30	6.1	93.7	0.2	0.73	0.32	0.76	0.84	1.58	13763	1737	13	6	10	0	0	logfile
✔	9KBD	62222	2025-07-28	2024-10-30	3.7	3.92	3.70	3.9	0.003	0.60	0.0	0.04	15.30	0.00	2.236	7.25	0.17	4.1	95.9	0.0	-1.05	0.73	0.78	1.71	3.9	0.003	0.62	0.0	0.04	16.95	0.00	2.396	11.28	1.35	4.1	95.9	0.0	0.33	0.75	0.72	0.73	1.56	10728	1318	4	0	0	0	0	logfile
✔	9KBF	62223	2025-07-23	2024-10-30	3.74	3.96	3.77	3.9	0.004	0.64	0.0	0.05	14.54	0.00	2.199	6.95	0.20	7.4	92.6	0.0	-1.16	0.71	0.80	1.76	3.9	0.004	0.63	0.0	0.04	16.71	0.00	2.469	13.12	1.96	5.3	94.7	0.0	0.01	0.76	0.72	0.81	1.53	4587	569	2	0	0	0	0	logfile
✔	9E6H	47565	2025-07-25	2024-10-30	2.84	3.49	2.79	3.2	0.014	0.99	0.0	0.05	19.32	0.00	2.087	3.06	0.00	1.6	98.4	0.0	0.47	0.80	0.77	4.47	3.2	0.004	0.87	0.0	0.05	14.65	0.00	2.083	4.85	0.36	2.1	97.9	0.0	0.69	1.07	0.83	0.86	5.43	8106	978	16	0	52	0	0	logfile
✔	9KAP	62213	2025-07-23	2024-10-29	3.2	3.06	1.91	3.3	0.088	3.28	0.0	0.17	19.33	0.02	2.177	26.58	0.00	0.0	100.0	0.0	-2.23	0.34	0.62	5.98	3.2	0.129	5.88	13.0	0.31	27.23	0.03	1.791	14.42	15.00	0.0	100.0	0.0	-3.39	0.79	0.43	0.81	2.62	804	60	24	0	12	0	0	logfile
✔	9H78	51913	2025-07-26	2024-10-27	2.7	2.64	2.72	2.7	0.014	1.95	2.0	0.10	13.77	0.01	2.549	0.06	1.10	1.7	98.1	0.2	0.21	0.76	0.84	4.44	2.7	0.004	0.72	0.0	0.05	17.27	0.00	2.525	3.27	4.63	4.2	95.8	0.0	0.76	0.84	0.74	0.83	3.22	8272	1056	5	0	1	0	0	logfile
✔	9K9L	62193	2025-07-27	2024-10-27	3.66	3.66	3.61	3.7	0.004	0.65	0.0	0.04	28.69	0.01	2.253	10.54	0.80	0.7	99.3	0.0	0.22	0.71	0.75	1.31	3.7	0.004	0.58	0.0	0.03	29.58	0.00	2.580	9.06	2.00	1.9	98.1	0.0	2.99	0.72	0.74	0.78	1.15	9813	599	10	242	0	0	0	logfile
✔	9H76	51912	2025-07-23	2024-10-26	2.9	3.57	2.91	3.4	0.005	0.59	0.0	0.04	15.75	0.01	2.053	5.90	0.23	1.7	98.3	0.0	2.14	0.68	0.90	3.66	3.4	0.004	0.64	0.0	0.04	16.50	0.00	2.475	6.85	2.96	2.0	98.0	0.0	2.07	0.60	0.64	0.87	3.27	4157	547	3	0	0	0	0	logfile
✔	9K7N	62150	2025-07-23	2024-10-24	3.3	3.61	3.28	3.6	0.007	1.23	1.0	0.09	12.28	0.01	2.115	9.25	1.08	1.8	98.2	0.0	2.30	0.48	0.74	1.88	3.6	0.003	0.62	0.0	0.04	15.73	0.00	2.572	8.44	2.80	1.8	98.2	0.0	1.75	0.99	0.53	0.81	0.88	4332	545	2	0	2	0	0	logfile
✔	9K7B	62147	2025-07-23	2024-10-23	2.75	2.95	2.74	3.0	0.013	1.40	0.0	0.10	14.68	0.01	1.784	20.92	1.71	1.1	98.9	0.0	1.92	0.43	0.67	3.19	3.0	0.003	0.61	0.0	0.04	14.43	0.00	2.341	8.48	0.86	2.8	97.2	0.0	1.60	0.93	0.60	0.86	3.05	4522	544	2	0	11	19	0	logfile
✔	9E2H	47452	2025-07-31	2024-10-22	2.77	2.17	2.81	1.9	0.004	0.69	0.0	0.04	19.52	0.01	2.241	8.51	4.70	3.0	96.4	0.7	1.85	0.79	0.80	2.46	1.9	0.004	0.66	0.0	0.04	19.51	0.01	2.387	7.01	4.50	2.0	97.3	0.7	2.84	1.14	0.80	0.81	2.44	13074	1646	6	0	0	0	0	logfile
✔	9E2P	47460	2025-07-28	2024-10-22	3.57	3.82	3.60	3.8	0.017	1.60	2.0	0.06	17.62	0.01	2.131	2.64	0.00	4.9	95.1	0.0	-3.13	0.75	0.84	2.55	3.7	0.002	0.59	0.0	0.04	18.07	0.00	1.935	3.72	1.74	4.8	95.2	0.0	0.21	0.46	0.75	0.84	1.74	10282	1262	6	0	10	0	0	logfile
✔	9H5G	51884	2025-07-23	2024-10-22	2.48	2.59	2.46	2.7	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.004	0.82	0.0	0.05	16.80	0.00	2.606	2.08	4.23	6.2	93.8	0.0	-2.64	0.66	0.45	0.89	3.87	3300	432	6	0	0	0	0	logfile
✔	9K6Q	62132	2025-07-24	2024-10-22	2.7	2.65	2.52	2.7	0.004	0.83	0.0	0.07	20.25	0.01	2.228	6.93	0.81	4.0	95.9	0.1	-0.54	0.71	0.80	2.96	2.7	0.003	0.63	0.0	0.04	20.17	0.01	2.525	9.70	2.44	3.7	96.3	0.0	0.07	0.48	0.69	0.80	2.66	6276	706	4	31	1	0	0	logfile
✔	9K6R	62133	2025-07-23	2024-10-22	2.7	2.79	2.65	2.8	0.004	0.77	0.0	0.06	20.51	0.01	2.235	6.23	0.49	2.9	97.1	0.0	-0.70	0.70	0.75	3.23	2.8	0.003	0.60	0.0	0.04	20.56	0.00	2.010	9.28	1.46	2.9	97.1	0.0	-0.12	1.68	0.66	0.77	3.60	4405	480	4	29	1	0	0	logfile
✔	9K6L	62129	2025-07-26	2024-10-22	2.77	2.29	2.78	2.1	0.004	0.77	0.0	0.05	16.44	0.01	2.090	16.17	0.31	3.3	96.7	0.0	0.62	0.73	0.75	2.26	2.0	0.003	0.65	0.0	0.04	17.41	0.00	2.470	12.17	4.18	2.9	97.1	0.0	0.57	0.41	0.77	0.78	2.25	8914	1127	6	0	1	0	0	logfile

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