Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K6P	62131	2025-07-24	2024-10-22	3.2	3.57	3.38	3.6	0.010	1.43	0.0	0.07	20.78	0.02	2.253	9.99	1.18	8.6	91.4	0.0	-3.66	0.56	0.53	0.73	3.6	0.004	0.75	0.0	0.05	20.17	0.01	2.506	17.44	3.38	5.8	94.2	0.0	-2.15	1.70	0.56	0.55	1.01	6576	772	3	19	0	0	0	logfile
✔	9K6R	62133	2025-07-23	2024-10-22	2.7	2.79	2.65	2.8	0.004	0.77	0.0	0.06	20.51	0.01	2.235	6.23	0.49	2.9	97.1	0.0	-0.70	0.70	0.75	3.23	2.8	0.003	0.60	0.0	0.04	20.56	0.00	2.010	9.28	1.46	2.9	97.1	0.0	-0.12	1.68	0.66	0.77	3.60	4405	480	4	29	1	0	0	logfile
✔	9E2P	47460	2025-07-28	2024-10-22	3.57	3.82	3.60	3.8	0.017	1.60	2.0	0.06	17.62	0.01	2.131	2.64	0.00	4.9	95.1	0.0	-3.13	0.75	0.84	2.55	3.7	0.002	0.59	0.0	0.04	18.07	0.00	1.935	3.72	1.74	4.8	95.2	0.0	0.21	0.46	0.75	0.84	1.74	10282	1262	6	0	10	0	0	logfile
✔	9H5G	51884	2025-07-23	2024-10-22	2.48	2.59	2.46	2.7	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.004	0.82	0.0	0.05	16.80	0.00	2.606	2.08	4.23	6.2	93.8	0.0	-2.64	0.66	0.45	0.89	3.87	3300	432	6	0	0	0	0	logfile
✔	9K41	62038	2025-07-29	2024-10-21	2.81	3.92	3.03	3.1	0.004	0.56	0.0	0.04	28.88	0.00	2.209	6.01	1.29	1.6	98.4	0.0	1.93	0.91	0.88	2.33	3.1	0.004	0.64	0.0	0.03	28.90	0.00	2.472	7.51	1.61	2.6	97.4	0.0	3.27	1.21	0.91	0.89	2.03	11828	746	10	290	0	0	0	logfile
✔	9K40	62036	2025-07-29	2024-10-21	3.15	3.98	3.19	3.3	0.004	0.61	0.0	0.04	28.83	0.00	2.219	7.01	0.65	1.0	99.0	0.0	2.72	0.88	0.81	2.25	3.3	0.006	0.67	0.0	0.04	29.48	0.00	2.441	8.37	2.59	2.1	97.9	0.0	3.19	0.64	0.92	0.89	1.94	11824	746	10	290	0	0	0	logfile
✔	9K42	62040	2025-07-29	2024-10-21	3.14	3.95	3.18	3.2	0.006	0.84	0.0	0.06	31.95	0.00	2.050	5.40	0.49	1.2	98.8	0.0	2.37	0.86	0.78	2.08	3.2	0.004	0.61	0.0	0.03	29.25	0.00	2.509	9.94	1.78	2.1	97.9	0.0	3.21	2.28	0.92	0.87	2.01	11824	746	10	290	0	0	0	logfile
✔	9K3Z	62034	2025-07-29	2024-10-21	2.75	3.65	2.90	3.1	0.004	0.59	0.0	0.04	29.15	0.00	2.204	5.41	0.64	1.1	98.9	0.0	2.69	0.90	0.86	2.83	3.1	0.004	0.61	0.0	0.03	28.89	0.00	2.104	6.91	2.09	1.2	98.8	0.0	3.76	0.52	0.90	0.88	2.41	11814	744	10	290	0	0	0	logfile
✔	9K43	62042	2025-07-29	2024-10-21	2.87	4.01	3.12	3.2	0.004	0.61	0.0	0.04	28.51	0.00	2.234	7.24	0.80	0.8	99.2	0.0	2.81	0.90	0.85	2.69	3.2	0.004	0.63	0.0	0.03	28.57	0.00	2.487	7.71	1.45	1.9	98.1	0.0	3.05	1.23	0.91	0.89	1.88	11814	744	10	290	0	0	0	logfile
✔	9E1T	47420	2025-07-28	2024-10-21	3.0	3.15	3.04	3.1	0.002	0.38	0.0	0.04	10.62	0.00	2.108	5.74	0.00	2.7	97.3	0.0	0.55	0.72	0.79	3.41	3.1	0.003	0.62	0.0	0.04	15.81	0.00	2.099	8.75	1.11	4.4	95.6	0.0	0.26	2.75	0.74	0.80	3.16	10032	1204	4	2	2	0	0	logfile
✔	9K2W	61999	2025-07-30	2024-10-18	3.54	4.01	3.60	3.9	0.003	0.89	2.0	0.05	17.20	0.01	2.112	13.08	0.22	4.0	96.0	0.0	-0.11	0.74	0.79	1.01	3.9	0.003	0.63	0.0	0.04	17.74	0.00	2.512	8.64	2.23	2.8	97.2	0.0	0.64	0.40	0.76	0.80	1.13	12438	1559	3	0	2	0	0	logfile
✔	9K2X	62000	2025-07-30	2024-10-18	3.75	4.23	3.78	4.0	0.004	0.87	0.0	0.05	17.38	0.01	2.140	16.54	0.45	4.5	95.5	0.0	-0.46	0.76	0.73	0.97	4.0	0.005	0.72	0.0	0.04	17.63	0.00	2.408	13.71	3.51	4.8	95.1	0.1	0.15	0.47	0.79	0.76	1.04	12376	1551	2	0	0	0	0	logfile
✔	9DZV	47339	2025-07-29	2024-10-17	3.27	2.56	3.33	2.1	0.003	0.57	0.0	0.04	14.17	0.00	2.235	12.36	4.33	9.7	90.3	0.0	-0.56	0.80	0.79	2.68	2.1	0.003	0.75	0.0	0.05	14.61	0.00	2.014	12.09	3.84	9.9	90.1	0.0	-0.97	0.46	0.80	0.78	2.15	11502	1431	7	0	12	0	0	logfile
✔	9K26	61991	2025-07-27	2024-10-17	3.0	3.96	3.34	3.9	0.004	0.71	0.0	0.05	13.77	0.00	1.994	11.88	0.72	7.9	92.0	0.1	-1.03	0.64	0.64	0.07	3.8	0.004	0.90	0.0	0.04	17.13	0.00	2.321	10.31	3.21	6.2	93.8	0.0	-0.89	1.56	0.65	0.76	1.61	8967	1147	7	0	1	0	0	logfile
✔	9K25	61990	2025-07-25	2024-10-17	3.31	3.71	3.36	3.8	0.004	0.64	0.0	0.04	15.93	0.00	2.206	7.05	0.00	4.6	95.4	0.0	-1.33	0.63	0.76	1.72	3.8	0.003	0.60	0.0	0.04	16.71	0.00	2.547	7.70	5.19	4.0	96.0	0.0	-0.61	1.15	0.65	0.78	1.06	7117	976	5	0	0	0	0	logfile
✔	9K27	61992	2025-07-27	2024-10-17	2.68	3.81	3.15	3.6	0.004	0.68	0.0	0.04	13.89	0.00	1.835	9.30	0.10	6.3	93.7	0.0	-0.54	0.75	0.86	2.98	3.6	0.003	0.75	0.0	0.04	16.38	0.00	2.488	7.23	1.69	5.4	94.6	0.0	0.21	1.50	0.67	0.81	2.74	9213	1167	7	0	1	0	0	logfile
✔	9K24	61989	2025-07-23	2024-10-17	3.6	2.93	2.70	4.0	0.002	0.59	0.0	0.05	17.48	0.00	2.503	11.79	0.00	12.9	87.1	0.0	-2.81	0.34	0.65	4.11	3.7	0.005	0.88	0.0	0.05	18.56	0.00	2.591	11.79	2.90	17.5	82.5	0.0	-3.68	1.18	0.36	0.72	3.65	2682	384	6	0	0	0	0	logfile
✔	9K23	61988	2025-07-23	2024-10-17	2.6	2.16	2.06	3.0	0.005	0.56	0.0	0.05	13.00	0.00	2.225	5.47	0.00	4.7	95.3	0.0	-3.85	0.43	0.88	6.96	3.0	0.006	0.60	0.0	0.05	17.74	0.00	2.583	3.35	4.17	6.2	93.8	0.0	-2.92	0.37	0.44	0.88	6.72	2772	396	6	0	0	0	0	logfile
✔	9K1C	61971	2025-07-24	2024-10-16	3.2	3.44	3.16	3.5	0.002	0.92	0.0	0.04	13.74	0.00	2.213	5.89	0.00	2.2	97.8	0.0	2.36	0.64	0.76	2.57	3.5	0.003	0.58	0.0	0.04	15.39	0.00	2.384	6.34	1.33	2.7	97.3	0.0	1.66	0.39	0.59	0.78	2.40	6611	871	5	0	1	0	0	logfile
✔	9K1D	61972	2025-07-25	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.004	0.65	0.0	0.04	16.81	0.00	2.412	7.07	3.41	2.7	97.3	0.0	0.80	0.38	0.71	0.85	1.31	6892	858	5	0	6	0	0	logfile

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