Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K1D	61972	2025-07-25	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.004	0.65	0.0	0.04	16.81	0.00	2.412	7.07	3.41	2.7	97.3	0.0	0.80	0.38	0.71	0.85	1.31	6892	858	5	0	6	0	0	logfile
✔	9K20	61986	2025-07-26	2024-10-16	2.65	2.93	2.73	2.9	0.004	0.78	0.0	0.04	16.09	0.01	2.225	6.92	0.00	2.6	97.4	0.0	0.07	0.66	0.78	3.18	2.9	0.003	0.58	0.0	0.04	16.38	0.00	2.420	6.12	2.90	2.6	97.4	0.0	0.59	0.26	0.66	0.79	3.23	8292	1111	6	0	1	0	0	logfile
✔	9DZ2	47323	2025-07-27	2024-10-15	3.31	3.93	3.33	3.7	0.004	0.74	0.0	0.05	14.55	0.01	2.174	10.10	0.49	6.3	93.2	0.6	-2.10	0.78	0.73	3.18	3.8	0.003	0.69	0.0	0.04	15.43	0.00	2.346	6.15	2.14	6.7	92.7	0.6	-1.60	0.74	0.76	0.79	2.97	9523	1207	8	0	0	0	0	logfile
✔	9JWG	61852	2025-07-30	2024-10-10	3.47	3.90	3.74	3.8	0.007	0.99	8.0	0.06	16.67	0.01	2.010	14.53	1.68	9.0	90.6	0.4	-1.58	0.70	0.77	1.54	3.8	0.003	0.73	0.0	0.04	17.43	0.01	2.509	10.21	2.75	7.3	92.6	0.1	-0.45	0.49	0.69	0.79	1.40	11647	1456	2	0	0	0	0	logfile
✔	9H1S	51771	2025-07-24	2024-10-10	3.0	3.84	2.13	3.4	0.023	1.64	0.0	0.07	9.90	0.01	2.272	5.47	0.00	3.8	96.2	0.0	-1.11	0.49	0.82	2.90	3.4	0.004	0.80	0.0	0.05	14.41	0.01	2.418	11.66	1.43	4.4	95.6	0.0	-0.22	1.72	0.50	0.83	1.91	4994	616	4	0	2	0	0	logfile
✔	9H1Z	51786	2025-07-29	2024-10-10	3.3	3.72	3.44	3.7	0.015	0.99	2.0	0.05	13.83	0.01	1.599	4.31	0.91	3.1	96.9	0.0	-1.10	0.54	0.66	3.18	3.6	0.011	0.68	0.0	0.04	15.24	0.00	2.447	3.39	1.24	3.5	96.5	0.0	0.97	2.18	0.67	0.80	2.49	10892	1340	3	0	1	0	0	logfile
✔	9JVW	61845	2025-07-27	2024-10-09	3.41	3.87	3.45	3.8	0.008	1.12	0.0	0.08	14.78	0.01	2.210	7.00	0.29	5.2	94.8	0.0	-3.94	0.47	0.64	1.70	3.8	0.003	0.68	0.0	0.04	16.06	0.00	2.500	7.67	2.36	3.4	96.6	0.0	1.42	1.29	0.54	0.72	1.61	9480	1245	6	0	6	0	0	logfile
✔	9DWM	47255	2025-07-31	2024-10-09	4.2	5.01	—	4.2	0.005	0.61	0.0	0.04	30.43	0.00	2.339	6.64	0.00	3.0	97.0	0.0	2.59	0.90	0.88	—	4.2	0.007	0.67	0.0	0.04	30.61	0.00	2.493	13.94	0.00	6.8	93.2	0.0	1.48	1.45	0.90	0.89	—	11175	1065	12	289	0	0	0	logfile
✔	9DWK	47253	2025-07-31	2024-10-09	4.3	6.45	4.39	4.3	0.005	0.66	0.0	0.06	30.86	0.00	2.231	7.56	0.00	1.0	99.0	0.0	2.01	0.93	0.90	—	4.3	0.005	0.58	0.0	0.04	31.05	0.00	1.959	12.88	0.00	3.5	96.5	0.0	3.89	1.28	0.93	0.91	—	10375	1068	12	249	0	0	0	logfile
✔	9JVG	61838	2025-07-26	2024-10-09	2.76	3.38	2.79	3.2	0.008	0.79	2.0	0.05	12.56	0.00	1.644	10.65	0.38	5.6	94.4	0.0	-0.72	0.69	0.75	2.63	3.2	0.003	0.67	0.0	0.04	15.99	0.00	2.444	8.35	2.64	2.8	97.2	0.0	0.27	0.61	0.67	0.76	2.50	8396	1151	5	0	0	0	0	logfile
✔	9JVH	61839	2025-07-23	2024-10-09	2.76	2.39	2.77	2.8	0.005	0.81	1.0	0.05	12.93	0.00	2.375	8.50	0.00	8.9	91.1	0.0	-1.37	0.71	0.73	4.42	2.9	0.003	0.62	0.0	0.04	15.28	0.00	2.620	5.43	1.94	4.5	95.5	0.0	0.50	0.50	0.73	0.75	2.28	2180	294	1	0	0	0	0	logfile
✔	9JVV	61844	2025-07-27	2024-10-09	2.82	3.24	2.83	3.2	0.003	0.67	0.0	0.04	12.39	0.00	2.265	8.46	0.10	3.4	96.6	0.0	-0.66	0.60	0.80	2.20	3.2	0.003	0.57	0.0	0.04	14.69	0.00	2.566	5.75	2.16	3.7	96.3	0.0	1.64	0.43	0.58	0.81	1.29	9405	1245	6	0	3	0	0	logfile
✔	9DWN	47258	2025-07-23	2024-10-09	3.2	2.91	3.15	3.3	0.004	0.63	0.0	0.04	14.43	0.00	2.165	6.64	0.45	2.6	97.4	0.0	2.60	0.56	0.80	3.93	3.3	0.003	0.50	0.0	0.04	14.66	0.00	2.522	6.52	1.57	2.4	97.6	0.0	4.12	0.26	0.54	0.82	3.73	4325	540	6	0	9	2	0	logfile
✔	9JVM	61840	2025-07-23	2024-10-09	2.36	2.47	2.27	3.0	0.009	1.11	0.0	0.05	12.65	0.01	2.211	12.67	0.00	11.2	88.4	0.4	-1.75	0.65	0.61	4.04	3.1	0.004	0.85	0.0	0.04	14.34	0.01	2.647	5.76	0.00	5.0	95.0	0.0	1.44	0.90	0.65	0.62	2.37	1800	267	1	0	0	0	0	logfile
✔	9JUN	61831	2025-07-27	2024-10-08	3.4	3.25	3.71	3.4	0.003	0.57	0.0	0.04	14.49	0.00	2.212	11.17	0.00	5.8	94.2	0.0	1.31	0.56	0.74	1.09	3.3	0.003	0.63	0.0	0.04	16.63	0.00	2.516	10.23	1.69	5.4	94.6	0.0	1.18	0.77	0.62	0.81	1.74	8971	1165	1	0	0	0	0	logfile
✔	9JUP	61833	2025-07-26	2024-10-08	3.1	2.60	3.37	3.0	0.004	0.57	0.0	0.04	16.34	0.00	1.964	8.84	0.00	4.0	96.0	0.0	1.64	0.56	0.76	2.56	3.0	0.004	0.61	0.0	0.04	16.97	0.00	1.913	9.70	3.41	4.6	95.3	0.1	1.27	0.37	0.59	0.80	2.51	8656	1118	2	0	4	0	0	logfile
✔	9JUo	61832	2025-07-26	2024-10-08	3.1	2.82	3.07	3.2	0.005	0.70	0.0	0.05	16.18	0.00	2.047	13.24	0.43	5.3	94.7	0.0	0.76	0.65	0.81	1.94	3.2	0.003	0.62	0.0	0.04	16.32	0.00	1.972	8.81	2.26	4.7	95.3	0.0	1.40	0.43	0.67	0.83	1.77	8858	1144	2	0	4	0	0	logfile
✔	9JUM	61830	2025-07-27	2024-10-08	3.1	3.55	3.61	3.4	0.005	0.76	0.0	0.05	15.66	0.01	1.922	15.77	0.00	4.1	95.9	0.0	0.83	0.70	0.83	1.75	3.4	0.003	0.69	0.0	0.04	16.09	0.00	2.010	13.04	1.69	4.7	95.3	0.0	1.70	0.48	0.71	0.85	1.60	9069	1165	2	0	5	0	0	logfile
✔	9DW9	47239	2025-07-30	2024-10-08	2.8	3.05	2.88	3.1	0.004	0.67	1.0	0.04	15.32	0.00	1.931	2.37	1.69	2.2	97.8	0.0	0.50	0.68	0.87	3.80	3.1	0.002	0.49	0.0	0.04	16.33	0.00	2.047	2.77	1.07	2.4	97.6	0.0	1.58	0.32	0.68	0.87	2.99	12332	1511	5	0	19	3	0	logfile
✔	9JUK	61828	2025-07-27	2024-10-08	3.3	2.84	3.64	3.3	0.004	0.64	0.0	0.04	16.73	0.01	2.036	14.03	0.11	4.9	95.1	0.0	0.83	0.54	0.70	1.78	3.3	0.003	0.59	0.0	0.04	16.99	0.00	2.004	11.61	2.32	5.4	94.6	0.0	1.09	0.41	0.54	0.72	1.72	9035	1165	2	0	4	0	0	logfile

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