Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9UGC	64136	2025-07-24	2025-04-11	3.52	3.75	3.56	3.7	0.003	0.63	0.0	0.04	16.67	0.00	2.197	12.78	0.43	3.7	96.3	0.0	1.13	0.70	0.77	1.11	3.7	0.004	0.65	0.0	0.04	17.67	0.00	2.496	11.95	4.54	4.1	95.9	0.0	1.16	0.41	0.70	0.78	1.03	6606	860	2	0	0	0	0	logfile
✔	9o51	70120	2025-07-30	2025-04-09	3.4	3.65	3.40	3.6	0.002	0.40	0.0	0.03	13.02	0.00	2.368	2.68	0.00	1.3	98.7	0.0	1.11	0.62	0.86	2.30	3.6	0.003	0.49	0.0	0.04	15.97	0.00	2.438	4.94	1.85	1.7	98.3	0.0	3.66	1.31	0.62	0.87	1.25	12302	1596	13	0	6	0	0	logfile
✔	9o58	70127	2025-07-30	2025-04-09	3.53	4.06	3.85	3.9	0.004	0.78	1.0	0.05	17.25	0.00	1.798	11.88	0.44	4.6	95.4	0.0	-1.08	0.68	0.79	1.42	3.9	0.003	0.65	0.0	0.04	17.37	0.00	2.262	9.84	3.99	4.0	96.0	0.0	-0.50	0.91	0.69	0.82	1.62	12422	1567	6	0	10	0	0	logfile
✔	9o54	70123	2025-07-24	2025-04-09	3.5	3.76	3.56	3.7	0.003	0.65	0.0	0.04	17.32	0.01	2.131	12.93	0.28	4.5	95.5	0.0	-1.25	0.71	0.80	2.18	3.7	0.003	0.63	0.0	0.04	17.61	0.00	2.510	9.78	4.72	4.2	95.8	0.0	-1.15	0.34	0.71	0.79	2.00	6433	827	4	0	1	0	0	logfile
✔	9UET	64091	2025-07-24	2025-04-09	3.68	3.90	3.67	3.9	0.009	1.42	10.0	0.06	15.61	0.01	1.497	15.67	0.32	5.5	94.5	0.0	-0.36	0.51	0.76	1.39	3.9	0.003	0.70	0.0	0.04	16.63	0.00	1.991	8.80	3.17	4.1	95.9	0.0	1.30	1.18	0.47	0.73	0.61	5906	736	4	0	6	0	0	logfile
✔	9UEQ	64089	2025-07-28	2025-04-09	3.2	3.93	3.26	3.7	0.003	0.66	0.0	0.05	13.44	0.01	2.325	5.00	0.10	8.2	91.6	0.1	-1.64	0.87	0.83	2.95	3.7	0.002	0.59	0.0	0.04	14.70	0.00	2.595	3.50	2.06	7.8	91.9	0.2	-0.61	0.62	0.83	0.83	2.53	10030	1342	5	0	3	3	0	logfile
✔	9o4A	70091	2025-07-26	2025-04-08	2.8	2.25	2.78	2.0	0.008	0.86	0.0	0.05	13.62	0.01	2.246	10.46	0.00	9.3	90.7	0.1	-1.88	0.76	0.75	2.43	2.1	0.004	0.69	0.0	0.04	16.92	0.00	2.463	8.05	2.13	9.7	90.3	0.0	-0.87	0.61	0.77	0.76	2.48	8804	1116	6	0	3	0	0	logfile
✔	9o38	70072	2025-07-27	2025-04-06	3.0	3.78	3.02	3.4	0.003	0.56	0.0	0.04	17.71	0.00	2.062	7.07	2.44	2.5	97.5	0.0	1.09	0.67	0.70	1.62	3.5	0.004	0.76	0.0	0.04	17.35	0.00	2.400	10.08	2.44	2.4	97.6	0.0	0.93	0.90	0.69	0.83	2.24	9824	1258	6	0	0	0	0	logfile
✔	9UDi	64070	2025-07-24	2025-04-06	3.01	3.17	2.93	3.2	0.004	0.66	0.0	0.04	24.51	0.01	2.120	12.75	0.00	10.6	89.4	0.0	-1.97	0.56	0.61	1.59	3.2	0.003	0.63	0.0	0.03	24.56	0.01	2.168	8.74	1.03	9.8	90.2	0.0	-1.18	1.01	0.57	0.62	1.12	4986	257	4	140	0	0	0	logfile
✔	9UAV	63996	2025-07-30	2025-04-01	3.7	3.91	3.71	3.9	0.007	1.17	1.0	0.06	18.88	0.01	2.161	9.31	0.66	4.1	95.8	0.1	0.46	0.52	0.57	0.85	3.8	0.010	1.06	0.0	0.05	17.03	0.01	2.288	16.61	3.61	6.3	93.5	0.2	0.20	1.25	0.54	0.60	0.76	12831	1875	12	0	20	0	0	logfile
✔	9QQD	53298	2025-07-23	2025-03-31	3.1	4.12	3.12	3.7	0.014	1.96	9.0	0.09	20.81	0.04	2.429	8.02	13.84	4.7	94.5	0.9	-3.10	0.93	0.90	1.96	3.7	0.003	0.58	0.0	0.04	18.41	0.00	2.563	6.26	2.92	3.5	96.5	0.0	2.85	0.71	0.89	0.84	1.67	4592	579	1	0	0	0	0	logfile
✔	9QPV	53284	2025-07-25	2025-03-29	3.3	3.74	3.29	3.6	0.003	0.76	0.0	0.05	13.05	0.01	2.194	6.81	0.00	5.5	94.5	0.0	-2.28	0.74	0.66	0.90	3.6	0.004	0.86	0.0	0.05	16.30	0.01	2.442	17.61	1.76	4.2	95.8	0.0	-0.28	2.25	0.79	0.76	0.80	7776	1000	1	0	0	0	0	logfile
✔	9U9B	63960	2025-07-23	2025-03-27	3.25	2.52	3.06	3.2	0.003	0.59	0.0	0.04	13.35	0.01	2.186	8.84	0.00	5.0	95.0	0.0	0.54	0.71	0.79	2.99	3.2	0.003	0.67	0.0	0.04	15.51	0.00	2.518	8.37	4.09	5.0	94.8	0.2	1.10	0.99	0.73	0.83	1.90	3261	439	4	0	0	0	0	logfile
✔	9QLU	53234	2025-07-23	2025-03-21	2.54	2.32	2.28	2.3	0.004	0.68	0.0	0.04	12.32	0.01	2.367	3.25	0.00	3.4	96.6	0.0	-1.75	0.43	0.88	8.63	2.3	0.006	1.57	1.0	0.06	15.47	0.00	2.498	5.42	1.67	1.9	98.1	0.0	-1.94	0.53	0.41	0.89	8.51	2360	330	5	0	0	0	0	logfile
✔	9QLN	53229	2025-07-29	2025-03-21	3.2	3.89	3.28	3.6	0.005	1.00	0.0	0.06	15.29	0.01	2.362	3.06	1.34	4.4	95.5	0.1	-1.72	0.79	0.73	1.11	3.6	0.007	0.76	0.0	0.05	15.87	0.00	2.050	14.47	2.01	6.5	93.4	0.1	-0.64	0.49	0.80	0.76	1.48	10829	1340	2	0	6	0	0	logfile
✔	9QLS	53233	2025-07-29	2025-03-21	3.54	4.01	3.59	3.6	0.004	0.98	0.0	0.05	15.52	0.01	2.406	2.68	1.57	4.8	95.2	0.1	-2.53	0.76	0.70	1.47	3.6	0.003	0.74	0.0	0.05	16.42	0.00	2.206	11.20	2.64	4.8	95.2	0.0	-1.07	1.05	0.78	0.75	1.56	11100	1370	2	0	6	0	0	logfile
✔	9U5A	63867	2025-07-23	2025-03-21	2.98	3.39	3.06	3.3	0.010	1.35	1.0	0.09	11.09	0.01	2.387	7.80	0.00	3.1	96.9	0.0	0.38	0.51	0.76	1.20	3.3	0.003	0.59	0.0	0.04	14.97	0.00	2.625	6.11	1.49	1.7	98.3	0.0	3.22	1.12	0.49	0.76	1.20	3268	432	2	0	1	0	0	logfile
✔	9QKV	53222	2025-07-31	2025-03-20	2.74	3.47	2.83	3.2	0.005	0.97	0.0	0.05	15.62	0.01	2.345	2.01	0.73	3.9	96.1	0.1	-1.33	0.80	0.85	3.21	3.2	0.004	0.60	0.0	0.04	15.96	0.00	2.221	6.54	1.66	3.5	96.5	0.1	-0.06	0.35	0.74	0.80	3.14	13764	1688	2	0	12	0	0	logfile
✔	9U55	63862	2025-07-23	2025-03-20	3.17	3.49	3.11	3.4	0.011	1.38	1.0	0.09	12.44	0.01	2.344	5.98	0.53	3.3	96.7	0.0	-1.06	0.54	0.75	2.38	3.4	0.003	0.66	0.0	0.04	15.05	0.00	2.513	7.07	2.66	1.0	99.0	0.0	2.47	1.25	0.63	0.83	2.78	3707	496	2	0	1	0	0	logfile
✔	9NU1	49792	2025-07-24	2025-03-19	3.6	4.02	2.94	4.0	0.004	0.87	0.0	0.05	20.81	0.00	2.475	8.03	1.83	4.2	95.8	0.0	-1.71	0.77	0.79	2.04	4.0	0.004	0.85	0.0	0.05	16.89	0.00	2.516	8.83	6.42	4.7	95.3	0.0	-1.55	1.17	0.78	0.80	2.16	5092	628	10	0	15	0	0	logfile

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