Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9U3V	63828	2025-07-23	2025-03-18	3.2	2.32	3.38	3.0	0.002	0.46	0.0	0.04	17.95	0.00	2.211	7.91	0.00	1.7	98.3	0.0	0.67	0.75	0.74	2.00	3.0	0.004	0.63	0.0	0.04	18.37	0.00	2.588	8.50	2.70	2.7	97.3	0.0	3.14	1.05	0.75	0.75	1.97	3401	426	1	0	0	0	0	logfile
✔	9U3Q	63824	2025-07-23	2025-03-18	3.37	2.34	3.33	3.2	0.003	0.62	0.0	0.04	16.93	0.00	2.109	9.68	0.00	1.7	98.1	0.2	2.18	0.63	0.61	1.46	3.0	0.003	0.60	0.0	0.04	17.42	0.00	2.446	11.10	3.07	1.7	98.3	0.0	3.45	0.94	0.64	0.61	1.46	3853	482	1	0	0	0	0	logfile
✔	9U3U	63827	2025-07-24	2025-03-18	3.5	2.37	3.42	3.1	0.002	0.51	0.0	0.04	17.92	0.00	2.197	9.54	0.41	2.2	97.8	0.0	0.92	0.69	0.67	0.98	3.0	0.003	0.66	0.0	0.04	18.38	0.00	2.523	10.14	4.29	2.4	97.6	0.0	1.66	0.52	0.70	0.68	1.08	6702	848	1	0	0	0	0	logfile
✔	9U3S	63826	2025-07-23	2025-03-18	3.1	2.29	3.08	2.9	0.003	0.62	0.0	0.04	18.34	0.00	2.147	12.25	1.09	0.7	99.3	0.0	0.92	0.76	0.76	1.73	2.9	0.003	0.62	0.0	0.04	18.48	0.00	2.547	9.45	4.08	1.5	98.5	0.0	2.60	0.44	0.75	0.76	1.91	3384	425	1	0	0	0	0	logfile
✔	9U3P	63823	2025-07-24	2025-03-18	2.65	2.81	2.70	2.9	0.002	0.45	0.0	0.04	17.92	0.00	2.215	8.27	2.77	2.4	97.6	0.0	0.85	0.64	0.85	3.78	2.9	0.003	0.51	0.0	0.04	18.02	0.00	2.264	6.98	1.25	2.1	97.9	0.0	1.54	0.82	0.65	0.85	3.48	6655	828	3	0	2	0	0	logfile
✔	9U3R	63825	2025-07-24	2025-03-18	3.23	2.34	3.32	2.9	0.002	0.57	0.0	0.04	17.68	0.00	2.172	9.03	0.14	1.5	98.5	0.0	0.94	0.69	0.65	1.15	2.9	0.003	0.68	0.0	0.04	18.06	0.00	2.581	11.89	4.16	2.5	97.5	0.0	1.29	1.10	0.72	0.69	1.38	6690	847	1	0	0	0	0	logfile
✔	9MC8	63792	2025-07-23	2025-03-17	3.31	3.92	3.44	3.9	0.005	0.85	0.0	0.04	15.34	0.01	2.353	11.43	0.26	3.3	96.7	0.0	0.19	0.43	0.67	1.71	3.8	0.003	0.68	0.0	0.04	15.76	0.01	2.550	7.26	3.08	2.3	97.7	0.0	2.60	0.50	0.49	0.73	2.05	3721	489	2	0	1	0	0	logfile
✔	9NR9	49726	2025-07-31	2025-03-14	4.22	4.46	4.22	4.3	0.003	0.86	0.0	0.05	12.70	0.00	2.281	6.21	0.00	5.2	94.8	0.0	-1.29	0.69	0.72	—	4.3	0.003	0.72	0.0	0.04	12.73	0.00	2.410	10.65	0.00	5.6	94.4	0.0	0.31	0.62	0.70	0.75	—	13679	1865	10	0	4	0	0	logfile
✘	9QH0	53151	2025-07-31	2025-03-14	2.52	3.21	2.61	3.0	0.005	0.70	0.0	0.05	14.00	0.02	2.199	7.21	0.00	2.6	97.4	0.0	0.54	0.77	0.86	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12946	1702	6	0	0	7	0	logfile
✔	9MAU	63758	2025-07-23	2025-03-14	2.87	3.31	2.79	3.3	0.010	1.39	0.0	0.09	12.11	0.01	2.403	4.49	0.00	2.2	97.8	0.0	-0.76	0.43	0.69	2.53	3.3	0.003	0.57	0.0	0.04	14.92	0.00	2.610	3.98	1.46	1.8	98.2	0.0	2.52	1.07	0.46	0.73	2.02	3874	506	1	0	0	0	0	logfile
✔	9M9Y	63744	2025-07-23	2025-03-13	3.04	3.54	3.11	3.5	0.009	1.35	1.0	0.09	10.66	0.01	2.386	7.64	0.00	3.0	97.0	0.0	0.31	0.50	0.77	1.76	3.5	0.003	0.61	0.0	0.04	13.99	0.00	2.543	5.23	3.03	1.3	98.7	0.0	2.86	1.40	0.47	0.75	1.13	3668	475	1	0	0	0	0	logfile
✔	9M9V	63741	2025-07-23	2025-03-13	3.31	3.80	3.40	3.7	0.012	1.40	2.0	0.09	12.13	0.01	2.402	2.78	0.51	2.3	97.7	0.0	-0.35	0.53	0.74	2.36	3.7	0.003	0.62	0.0	0.04	15.81	0.00	2.531	6.76	2.29	2.7	97.1	0.2	2.65	1.99	0.52	0.75	1.36	3765	496	2	0	1	0	0	logfile
✔	9NoU	49617	2025-07-25	2025-03-10	2.8	3.00	2.81	3.0	0.004	0.69	0.0	0.05	17.49	0.00	2.394	6.80	1.24	1.1	98.9	0.0	0.16	0.65	0.84	3.03	3.0	0.004	0.61	0.0	0.05	17.63	0.00	2.533	6.26	4.57	0.9	99.1	0.0	0.81	1.00	0.68	0.85	2.77	7519	923	4	0	15	0	0	logfile
✔	9NoT	49616	2025-07-30	2025-03-10	3.8	3.07	—	3.4	0.003	0.69	0.0	0.04	13.72	0.00	2.550	8.29	0.00	2.2	97.8	0.0	0.15	0.73	0.72	2.59	3.4	0.003	0.69	0.0	0.04	15.47	0.00	2.519	7.88	1.42	2.2	97.8	0.0	0.36	0.50	0.77	0.78	2.36	12359	1542	4	0	16	0	0	logfile
✔	9NoS	49612	2025-07-30	2025-03-10	3.5	2.57	—	3.6	0.003	0.66	0.0	0.05	17.37	0.00	2.528	7.96	2.27	2.9	97.1	0.0	0.50	0.76	0.78	1.55	3.6	0.004	0.67	0.0	0.04	17.46	0.00	2.561	7.48	5.94	3.0	97.0	0.0	0.53	0.89	0.75	0.79	1.34	12555	1565	4	0	16	0	0	logfile
✔	9NoW	49619	2025-07-25	2025-03-10	3.1	3.59	3.24	3.6	0.004	0.65	0.0	0.05	17.10	0.01	2.420	7.76	0.97	1.4	98.6	0.0	0.46	0.73	0.83	2.70	3.5	0.004	0.95	1.0	0.05	17.04	0.00	2.357	7.10	4.14	1.3	98.7	0.0	1.01	0.64	0.69	0.83	2.49	7624	936	4	0	15	0	0	logfile
✔	9NoY	49621	2025-07-23	2025-03-10	3.7	3.83	3.57	3.8	0.003	0.61	0.0	0.04	17.43	0.01	2.625	9.70	1.33	2.0	98.0	0.0	1.89	0.48	0.81	1.26	3.8	0.004	0.72	0.0	0.04	18.24	0.01	2.606	11.15	4.89	2.4	97.6	0.0	2.58	0.53	0.50	0.81	1.77	2031	257	1	0	0	0	0	logfile
✔	9NoV	49618	2025-07-25	2025-03-10	3.3	3.72	3.42	3.7	0.005	0.57	0.0	0.04	17.38	0.00	2.451	5.36	3.05	1.4	98.6	0.0	0.57	0.72	0.86	2.75	3.7	0.003	0.51	0.0	0.04	16.93	0.00	2.474	5.29	3.41	1.1	98.9	0.0	0.89	0.25	0.72	0.86	2.59	7647	936	5	0	17	0	0	logfile
✔	9NoR	49608	2025-07-30	2025-03-10	3.4	2.47	—	3.5	0.004	0.68	0.0	0.05	17.33	0.00	1.892	8.48	1.91	2.9	97.1	0.0	0.50	0.74	0.77	1.41	3.5	0.003	0.62	0.0	0.04	17.55	0.00	2.529	7.28	4.84	2.5	97.5	0.0	0.79	0.31	0.73	0.79	1.26	12555	1565	4	0	16	0	0	logfile
✔	9NoX	49620	2025-07-25	2025-03-10	3.0	3.31	3.08	3.3	0.003	0.52	0.0	0.04	17.59	0.00	2.428	6.25	2.08	2.2	97.8	0.0	0.99	0.63	0.87	2.95	3.3	0.003	0.55	0.0	0.04	17.80	0.00	2.454	4.99	5.07	2.5	97.5	0.0	1.22	0.28	0.63	0.87	3.09	7965	1015	5	0	0	0	0	logfile

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