Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9No2	49592	2025-07-30	2025-03-07	3.05	3.28	3.05	3.3	0.003	0.62	0.0	0.05	13.60	0.00	2.181	4.67	0.00	5.6	94.4	0.0	-0.39	0.67	0.78	3.00	3.3	0.003	0.57	0.0	0.04	16.06	0.00	2.540	4.51	2.47	6.4	93.6	0.0	-0.01	0.32	0.65	0.79	2.65	11996	1556	4	0	0	0	0	logfile
✔	9M5Q	63647	2025-07-26	2025-03-06	3.3	3.34	2.64	3.6	0.009	1.18	0.0	0.07	11.53	0.00	2.306	0.48	0.24	9.9	89.7	0.4	-2.27	0.47	0.68	6.52	3.6	0.005	0.65	0.0	0.05	16.58	0.00	2.375	9.45	4.05	13.7	86.3	0.0	-2.57	1.33	0.49	0.73	5.48	8421	567	21	0	0	0	4263	logfile
✔	9NL2	49515	2025-07-30	2025-03-02	3.2	3.13	3.18	3.2	0.004	0.89	0.0	0.06	23.57	0.00	1.829	7.77	0.30	7.4	92.0	0.5	0.18	0.76	0.79	2.15	3.2	0.003	0.89	0.0	0.06	23.73	0.00	1.982	9.17	2.13	4.8	94.8	0.4	0.63	1.13	0.76	0.81	1.86	12138	1107	6	156	6	0	0	logfile
✔	9NL4	49517	2025-07-29	2025-03-02	4.6	6.06	4.63	4.1	0.008	1.14	0.0	0.09	21.03	0.01	1.621	24.82	0.00	13.1	86.0	0.8	-2.58	0.90	0.79	—	4.1	0.005	1.02	0.0	0.06	20.87	0.01	2.351	21.36	0.00	8.9	90.8	0.4	-1.24	1.38	0.92	0.86	—	10748	1107	6	92	4	0	0	logfile
✔	9NL3	49516	2025-07-30	2025-03-02	3.2	3.10	3.17	3.1	0.005	1.06	0.0	0.06	24.60	0.01	1.847	8.14	0.63	6.7	92.8	0.5	-1.43	0.77	0.82	2.25	3.1	0.003	0.81	0.0	0.04	23.82	0.00	2.022	7.70	1.78	5.4	94.4	0.2	-0.01	0.42	0.76	0.83	1.97	11939	1079	6	156	6	0	0	logfile
✔	9QAJ	52975	2025-07-29	2025-02-28	2.95	3.99	3.07	3.3	0.005	0.58	0.0	0.03	28.27	0.00	2.149	9.35	0.32	2.5	97.5	0.0	2.60	0.92	0.89	2.24	3.3	0.004	0.63	0.0	0.03	28.37	0.00	2.470	8.39	0.95	2.8	97.2	0.0	3.06	0.29	0.91	0.91	2.32	12144	796	14	290	0	0	0	logfile
✔	9NJK	49485	2025-07-31	2025-02-27	3.37	4.19	3.41	3.8	0.003	0.62	0.0	0.04	13.38	0.00	2.038	11.30	0.07	1.7	98.3	0.0	0.69	0.76	0.77	1.14	3.8	0.002	0.66	0.0	0.04	15.20	0.00	1.973	8.37	1.10	1.5	98.5	0.0	0.94	0.94	0.76	0.79	1.20	13780	1789	10	0	8	0	0	logfile
✔	9QA6	52972	2025-07-25	2025-02-27	2.81	3.39	2.68	3.2	0.008	0.88	0.0	0.05	15.06	0.01	2.022	9.59	5.01	2.6	97.4	0.0	-0.08	0.83	0.88	4.99	3.2	0.004	0.60	0.0	0.04	14.90	0.00	1.952	6.46	1.58	3.5	96.5	0.0	0.11	0.86	0.84	0.89	4.48	7043	845	2	0	11	151	0	logfile
✔	9NJR	49488	2025-07-31	2025-02-27	2.7	3.40	2.80	3.3	0.004	0.65	0.0	0.05	14.45	0.00	2.014	13.45	0.20	2.8	97.2	0.0	-0.15	0.66	0.77	2.13	3.3	0.003	0.65	0.0	0.04	16.60	0.00	1.966	9.63	2.63	1.9	98.1	0.0	0.51	0.96	0.63	0.77	1.92	13863	1776	9	0	6	0	0	logfile
✔	9M2H	63585	2025-07-23	2025-02-27	3.4	3.63	3.49	3.6	0.011	1.21	1.0	0.07	10.75	0.01	2.284	2.76	0.00	7.0	92.7	0.2	-6.52	0.59	0.79	4.05	3.6	0.003	0.62	0.0	0.04	14.35	0.00	2.565	3.05	3.93	4.7	95.3	0.0	-2.62	0.56	0.57	0.79	1.86	3453	431	2	0	1	0	0	logfile
✔	9M1H	63571	2025-07-25	2025-02-26	2.55	2.99	2.64	2.9	0.010	0.89	3.0	0.07	10.11	0.01	2.162	6.35	1.62	3.7	96.3	0.0	-1.64	0.53	0.71	3.49	2.9	0.004	0.64	0.0	0.04	15.73	0.00	2.276	5.64	3.63	4.0	96.0	0.0	1.21	1.43	0.60	0.83	3.63	7055	910	5	0	1	1	0	logfile
✔	9M0S	63562	2025-07-23	2025-02-25	3.5	3.73	3.47	3.7	0.010	1.18	0.0	0.07	13.21	0.01	2.279	5.66	0.00	3.3	96.7	0.0	-3.69	0.46	0.77	2.61	3.7	0.003	0.61	0.0	0.04	15.28	0.00	2.508	7.98	2.19	2.4	97.6	0.0	1.26	0.43	0.42	0.75	0.83	3413	424	2	0	1	0	0	logfile
✔	9M0D	63543	2025-07-24	2025-02-24	3.41	3.65	3.38	3.6	0.005	0.66	0.0	0.04	12.64	0.01	2.064	6.57	0.58	6.0	94.0	0.0	-1.04	0.64	0.74	2.91	3.6	0.006	0.69	0.0	0.04	13.13	0.00	2.492	7.49	4.39	9.4	90.5	0.1	-0.36	0.92	0.66	0.79	2.75	6312	1044	4	0	0	0	0	logfile
✔	9NFi	49366	2025-07-26	2025-02-21	3.79	4.14	3.91	4.0	0.003	0.62	0.0	0.04	16.38	0.00	2.046	15.18	1.19	6.4	93.6	0.0	0.44	0.68	0.71	0.38	4.0	0.004	0.70	0.0	0.04	17.38	0.00	2.571	12.37	3.88	5.0	95.0	0.0	0.55	0.63	0.69	0.74	0.51	8664	1116	1	0	0	0	0	logfile
✔	9NGC	49382	2025-07-30	2025-02-21	2.8	3.25	2.96	3.2	0.004	0.73	0.0	0.05	11.95	0.01	2.227	2.33	0.00	3.2	96.8	0.0	-0.75	0.57	0.82	4.24	3.2	0.002	0.51	0.0	0.04	14.79	0.00	2.608	3.72	1.81	3.8	96.2	0.0	0.73	1.27	0.54	0.81	3.75	12722	1550	10	0	7	0	0	logfile
✔	9NFK	49368	2025-07-25	2025-02-21	3.99	4.16	3.98	4.1	0.004	0.57	0.0	0.04	16.99	0.00	1.971	17.57	3.37	5.2	94.8	0.0	1.45	0.61	0.69	0.80	4.1	0.003	0.72	0.0	0.04	17.59	0.00	2.597	13.16	3.24	3.9	96.1	0.0	1.38	1.96	0.62	0.69	0.90	6975	898	1	0	0	0	0	logfile
✔	9NFM	49370	2025-07-26	2025-02-21	3.89	4.33	4.05	4.2	0.006	0.68	0.0	0.05	17.42	0.00	2.021	16.88	2.76	6.0	94.0	0.0	0.38	0.61	0.64	0.78	4.2	0.004	0.79	0.0	0.04	17.68	0.00	2.284	15.20	2.66	5.2	94.8	0.0	0.36	1.69	0.65	0.77	0.65	8850	1142	2	0	1	0	0	logfile
✔	9NFJ	49367	2025-07-26	2025-02-21	3.98	4.14	3.93	4.1	0.003	0.66	0.0	0.04	18.28	0.00	2.111	13.97	3.01	4.7	95.3	0.0	0.93	0.69	0.76	0.56	4.0	0.003	0.69	0.0	0.04	18.60	0.00	2.526	10.95	3.55	3.8	96.2	0.0	1.37	0.34	0.69	0.76	0.56	8698	1122	1	0	0	0	0	logfile
✔	9NFL	49369	2025-07-25	2025-02-21	4.02	4.21	4.07	4.1	0.004	0.65	0.0	0.04	16.86	0.00	1.984	22.10	2.04	6.2	93.8	0.0	-0.12	0.61	0.70	—	4.1	0.003	0.69	0.0	0.04	14.66	0.00	2.454	13.38	0.00	3.3	96.6	0.1	0.32	0.72	0.60	0.70	—	6936	893	1	0	0	0	0	logfile
✔	9iHC	52864	2025-07-23	2025-02-21	2.95	3.58	3.00	3.4	0.003	0.58	0.0	0.04	14.94	0.00	2.349	5.33	0.62	2.0	98.0	0.0	0.55	0.84	0.88	3.98	3.4	0.005	0.56	0.0	0.04	16.20	0.00	2.602	6.05	1.87	1.8	98.2	0.0	0.95	0.35	0.83	0.87	4.15	4288	560	3	0	0	0	0	logfile

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